nkran

nkran's Stars

• langchain-ai/langchain

  🦜🔗 Build context-aware reasoning applications

  Language:Jupyter Notebook95.7k6927.9k15.5k

• lengstrom/fast-style-transfer

  TensorFlow CNN for fast style transfer ⚡🖥🎨🖼

  Language:Python10.9k3202312.6k

• seatgeek/fuzzywuzzy

  Fuzzy String Matching in Python

  Language:Python9.2k259187876

• PWhiddy/PokemonRedExperiments

  Playing Pokemon Red with Reinforcement Learning

  Language:Jupyter Notebook7k73119648

• seatgeek/thefuzz

  Fuzzy String Matching in Python

  Language:Python2.9k2352140

• aqlaboratory/openfold

  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

  Language:Python2.8k50356550

• lh3/seqtk

  Toolkit for processing sequences in FASTA/Q formats

  Language:C1.4k62174307

• vgteam/vg

  tools for working with genome variation graphs

  Language:C++1.1k472.1k195

• owkin/PyDESeq2

  A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

  Language:Python5951113767

• Gaius-Augustus/BRAKER

  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

  Language:Perl3682381981

• TransDecoder/TransDecoder

  TransDecoder source

  Language:Perl2761719060

• comprna/SUPPA

  SUPPA: Fast quantification of splicing and differential splicing

  Language:Python2631418462

• GoekeLab/awesome-nanopore

  A curated list of awesome nanopore analysis tools.

  23918245

• sgkit-dev/sgkit

  Scalable genetics toolkit

  Language:Python2371669532

• jiarong/VirSorter2

  customizable pipeline to identify viral sequences from (meta)genomic data

  Language:Python227421531

• gosling-lang/gos

  A declarative interactive genomics visualization library for Python.

  Language:Python21834814

• dfguan/purge_dups

  haplotypic duplication identification tool

  Language:C212914922

• alimanfoo/pysamstats

  A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

  Language:Python1921210043

• vgteam/sequenceTubeMap

  displays multiple genomic sequences in the form of a tube map

  Language:JavaScript1821425926

• onecodex/needletail

  Fast FASTX parsing and k-mer methods in Rust

  Language:Rust175225022

• censusreporter/census-api

  The home for the API that powers the Census Reporter project.

  Language:Python166145850

• CRG-CNAG/CalliNGS-NF

  GATK RNA-Seq Variant Calling in Nextflow

  Language:Nextflow13292654

• igvteam/igv-webapp

  IGV Web App

  Language:JavaScript1181012144

• akestoridis/mcdm

  Python implementation of multiple-criteria decision-making algorithms

  Language:Python65219

• jonassibbesen/rpvg

  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments

  Language:C++474286

• springer-math/Multiple-Criteria-Decision-Aid

  Source code for Multiple Criteria Decision Aid by Jason Papathanasiou, Nikolaos Ploskas

  Language:Python332021

• ImperialCollegeLondon/RCDS-intro-to-containers

  24209

• jonassibbesen/vgrna-project-paper

  Bash scripts and data used in pantranscriptomic paper

  Language:Shell22223

• Pecnut/course-intro-to-cpp

  Introduction to C++ course for the CM Hub at Imperial College

  Language:C++193018

• BU-ISCIII/SARS_Cov2_consensus-nf

  Nextflow pipeline to analyze SARS-Cov2 Illumina SISPA and/or amplicons data

  Language:Nextflow7303