Pinned Repositories
meirlop
Motif Enrichment In Ranked Lists Of Peaks
mepp
Motif Enrichment Positional Profiling (MEPP) quantifies a positional profile of motif enrichment along the length of DNA sequences centered on e.g. transcription start sites or transcription factor binding motifs.
nucleotides_to_matrices
Utility functions for conversion between IUPAC nucleotide codes and one-hot-like encoded sequence matrices, with extensions for RNA.
Project_Pipeline_RNA-seq-Illumina_100bp_paired-end
Snakemake based pipeline for processing Gleeson Lab RNAseq data.
TCGA-OV-miRNA-DHS-motif
MED_263_Final_SIFT4G_1KGenomes
MED 263 Final Project in jupyter notebook format, by Nathaniel Delos Santos. Based on SIFT4G protocol.
multi_species_multi-seq_pipeline
A RNA and ChIP -seq analysis pipeline accommodating multiple species and references
NDS-BISB_Bootcamp_Summer_Work
minima
Minima is a one-size-fits-all Jekyll theme for writers.
npdeloss's Repositories
npdeloss/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
npdeloss/nucleotides_to_matrices
Utility functions for conversion between IUPAC nucleotide codes and one-hot-like encoded sequence matrices, with extensions for RNA.
npdeloss/mepp
Motif Enrichment Positional Profiling (MEPP) quantifies a positional profile of motif enrichment along the length of DNA sequences centered on e.g. transcription start sites or transcription factor binding motifs.
npdeloss/meirlop
Motif Enrichment In Ranked Lists Of Peaks
npdeloss/ucsd-gbic
Webpage for the Graduate Bioinformatics Counctil of the University of California San Diego
npdeloss/minima
Minima is a one-size-fits-all Jekyll theme for writers.
npdeloss/staticman
💪 Static sites with superpowers
npdeloss/multi_species_multi-seq_pipeline
A RNA and ChIP -seq analysis pipeline accommodating multiple species and references
npdeloss/Project_Pipeline_RNA-seq-Illumina_100bp_paired-end
Snakemake based pipeline for processing Gleeson Lab RNAseq data.
npdeloss/MED_263_Final_SIFT4G_1KGenomes
MED 263 Final Project in jupyter notebook format, by Nathaniel Delos Santos. Based on SIFT4G protocol.
npdeloss/TCGA-OV-miRNA-DHS-motif
npdeloss/NDS-BISB_Bootcamp_Summer_Work