Oslo Centre for Biostatistics and Epidemiology
This is where we host some of the scientific software we produce at OCBE, a joint center between the University of Oslo and the Oslo University Hospital.
Oslo, Norway
Pinned Repositories
BayesMallows
R-package for Bayesian preference learning with the Mallows rank model.
bayesynergy
An R package for Bayesian semi-parametric modelling of in-vitro drug combination experiments
DIscBIO
A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
EnrichIntersect
R package for custom set enrichment analysis (CSEA) and interactive visualization of intersecting sets
PhenoPop
Phenotypic deconvolution in heterogeneous cancer cell populations using drug screen data
rBAPS
R implementation of the BAPS software for Bayesian Analysis of Population Structure
RCFF
An R package to convert between R and the Citation File Format (Druskat et. al., 2019) <doi:10.5281/zenodo.1003149>.
survomics
Tutorial on survival modeling with omics data
teaching_mf9130e
Course material for MF9130E
trajpy
Trajpy - empowering feature engineering for trajectory analysis across domains.
Oslo Centre for Biostatistics and Epidemiology's Repositories
ocbe-uio/BayesMallows
R-package for Bayesian preference learning with the Mallows rank model.
ocbe-uio/teaching_mf9130e
Course material for MF9130E
ocbe-uio/DIscBIO
A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
ocbe-uio/rBAPS
R implementation of the BAPS software for Bayesian Analysis of Population Structure
ocbe-uio/survomics
Tutorial on survival modeling with omics data
ocbe-uio/trajpy
Trajpy - empowering feature engineering for trajectory analysis across domains.
ocbe-uio/bayesynergy
An R package for Bayesian semi-parametric modelling of in-vitro drug combination experiments
ocbe-uio/EnrichIntersect
R package for custom set enrichment analysis (CSEA) and interactive visualization of intersecting sets
ocbe-uio/contingencytables
Statistical Analysis of Contingency Tables
ocbe-uio/psbcSpeedUp
Penalized Semiparametric Bayesian Cox Models
ocbe-uio/pyPhenoPop
Phenotypic deconvolution in heterogeneous cancer cell populations using drug screen data
ocbe-uio/BayesSurvive
Bayesian survival models for high-dimensional data
ocbe-uio/course_med3007
Course website for MED3007: Statistical Principles in Genomics
ocbe-uio/public-slides
A repository for slides presented to the public or publicly-available slides
ocbe-uio/workshop-stat-highdim
Workshop website for Statistical Principles in Machine Learning for Small Biomedical Data
ocbe-uio/BAPS
Bayesian Analysis of Population Structure
ocbe-uio/bd4predict
ocbe-uio/BD4QoL
Big Data for Quality of Life (BD4QoL) EU project repository.
ocbe-uio/burst
Code for the BURST trial
ocbe-uio/EMJMCMC
Bayesian model configuration, selection and averaging in complex regression contexts
ocbe-uio/git-course-2023
Open repository for testing. Git course november 2023
ocbe-uio/kidschd
Congenital Heart Disease among Children
ocbe-uio/MADMMplasso
Multi variate multi response 'ADMM' with interaction effects
ocbe-uio/Melanoma-Incidence-in-Norway
R scripts used in the analysis of Melanoma incidence in Norway, 1983–2019
ocbe-uio/nor-solidarity
GitHub respository for the NOR-SOLIDARITY trial
ocbe-uio/OCBEdev
Development tools for R packages (complements `devtools`, `usethis`, etc.)
ocbe-uio/optimal_BC_treatment
Modeling of mouse experiments suggests that optimal anti-hormonal treatment for breast cancer is diet-dependent
ocbe-uio/pCRscore
Python package to calculate pCR scores
ocbe-uio/permChacko
Implementation of a modified Chacko (1966) algorithm for order restriction
ocbe-uio/TruncExpFam
R package to generate data related to the Truncated Exponential Family