Oslo Centre for Biostatistics and Epidemiology
This is where we host some of the scientific software we produce at OCBE, a joint center between the University of Oslo and the Oslo University Hospital.
Oslo, Norway
Pinned Repositories
BayesMallows
R-package for Bayesian preference learning with the Mallows rank model.
bayesynergy
An R package for Bayesian semi-parametric modelling of in-vitro drug combination experiments
DIscBIO
A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
EnrichIntersect
R package for custom set enrichment analysis (CSEA) and interactive visualization of intersecting sets
PhenoPop
Phenotypic deconvolution in heterogeneous cancer cell populations using drug screen data
rBAPS
R implementation of the BAPS software for Bayesian Analysis of Population Structure
RCFF
An R package to convert between R and the Citation File Format (Druskat et. al., 2019) <doi:10.5281/zenodo.1003149>.
survomics
Tutorial on survival modeling with omics data
teaching_mf9130e
Course material for MF9130E
trajpy
Trajpy - empowering feature engineering for trajectory analysis across domains.
Oslo Centre for Biostatistics and Epidemiology's Repositories
ocbe-uio/DIscBIO
A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
ocbe-uio/PhenoPop
Phenotypic deconvolution in heterogeneous cancer cell populations using drug screen data
ocbe-uio/RCFF
An R package to convert between R and the Citation File Format (Druskat et. al., 2019) <doi:10.5281/zenodo.1003149>.
ocbe-uio/bayesynergy
An R package for Bayesian semi-parametric modelling of in-vitro drug combination experiments
ocbe-uio/Cancer_simulator
R code for the cancer simulator used in manuscript "A combined experimental-computational approach uncovers a role for the Golgi matrix protein Giantin in breast cancer progression".
ocbe-uio/CellMAPtracer
A user-friendly tracking system for long-term migratory and proliferating cells
ocbe-uio/elfi
A Python package for likelihood-free inference (LFI) methods such as Approximate Bayesian Computation (ABC)
ocbe-uio/matlab2r
Translation layer from MATLAB to R
ocbe-uio/2022_bioinformatics_workshop
Course materials for 2022 Oslo Bioinformatics Workshop
ocbe-uio/IPFStructPenalty
R package for the structured penalized regression
ocbe-uio/PriorElicitation
Shiny application for prior elicitation experiments from "Probabilistic elicitation of expert knowledge through assessment of computer simulations"
ocbe-uio/SuPerTreat
Scripts used in the project SuPerTreat
ocbe-uio/cellmigRation
An R package for tracking cells and analyzing their trajectories
ocbe-uio/LocalLowRankLearning
Code for reproducing the results in the conference paper by 'T. Tien Mai, Leiv Rønneberg, Zhi Zhao, Manuela Zucknick and Jukka Corander (2019)'
ocbe-uio/synergysplines
An R package for Bayesian semi-parametric modelling of in-vitro drug combination experiments
ocbe-uio/BayesSUR
R package for high-dimensional multivariate Bayesian variable and covariance selection in linear regression
ocbe-uio/discovering-host-viral-modulators
ocbe-uio/library-code
A small collection of mostly ad-hoc tools for research software development
ocbe-uio/napic
R code for the NAPiC trial analyses
ocbe-uio/no-covid-19
Repository for the NO-COVID-19 trial
ocbe-uio/ocbe
Miscellaneous R functions of potential common interest
ocbe-uio/ocbe-uio.github.io
Future consumer-friendly version of OCBE's GitHub page
ocbe-uio/validation-covid19-OUH-KCL