odelaneau/GLIMPSE

Issues

• GLIMPSE2_split_reference_static does not work

  #233 opened 10 hours ago by cautree
  1

• --max-depth request

  #232 opened 11 days ago by Ahhgust
  0

• Chromosome X imputation accuracy in males

  #231 opened 20 days ago by luciamayorf
  0

• Floating point exception (core dumped) when run GLIMPSE2_phase

  #220 opened 3 months ago by dangcaptkd2
  2

• GLIMPSE2_chunk ERROR: No variant found in region.

  #230 opened 2 months ago by itaibeno
  1

• Questions about multiple samples imputation by GLIMPSE2

  #219 opened 3 months ago by raksasa
  2

• guidance for using targeted sequencing

  #221 opened 2 months ago by jaredo-az
  1

• Phasing with larger chunks?

  #223 opened 2 months ago by drneavin
  5

• Glimpse2 phasing returning sites from ref not in sample file

  #228 opened 2 months ago by drneavin
  0

• Glimpse2_phase (2.0.0) segfault - but only with large number of variants in reference panel.

  #227 opened 2 months ago by bgulko
  0

• accuracy of imputed genotypes

  #226 opened 2 months ago by felassadi
  0

• How to imputate chrX using GLIMPSE2

  #218 opened 3 months ago by raksasa
  1

• GLIMPSE_phase (v1.1.1) segfault during finalization

  #225 opened 2 months ago by TedBrookings
  1

• GLIMPSE2_phase Error while loading regions

  #222 opened 3 months ago by ian15brown
  1

• GLIMPSE2_ligate: Three files overlapping at position

  #196 opened 9 months ago by Truongphikt
  5

• Buffer bug???

  #206 opened 7 months ago by leedchou
  2

• Glimpse concordance gzip output

  #210 opened 3 months ago by LouisLeNezet
  1

• Reported phasing (GT field)

  #177 opened a year ago by srubinacci
  3

• ESC[31mERROR: ESC[0mStates for individual 0 are zero. Error during selection.

  #217 opened 4 months ago by NahlaHu
  0

• "High Proportion of SNPs with MAF of 0 in Imputed Low-Coverage Samples: Normal or Indicative of Issues?"

  #209 opened 6 months ago by waitingwaitinghu
  1

• ERROR compiling GLIMPSE2 static execution

  #214 opened 4 months ago by leedchou
  2

• ERROR compiling GLIMPSE2 static execution

  #215 opened 4 months ago by leedchou
  0

• ERROR: Overlap between buffer-specific variants

  #211 opened 5 months ago by drneavin
  1

• Getting smaller chunk size

  #202 opened 6 months ago by ssinh10
  2

• Information regarding GLIMPSE2_split_reference

  #207 opened 6 months ago by dev3105
  0

• GLIMPSE_concordance: No set of files detected in .lst

  #197 opened 8 months ago by chvbs2000
  1

• Question Regarding the Use of GLIMPSE2 for Imputation

  #205 opened 7 months ago by Taewoong-Ha
  0

• Priority of chunk parameters

  #204 opened 7 months ago by leedchou
  2

• Issue in compiling GLIMPSE2

  #203 opened 7 months ago by dev3105
  1

• Imputing Indels in low coverage WGS

  #201 opened 7 months ago by sumudu-rangika
  0

• Support for GRCh37 version

  #200 opened 8 months ago by ssinh10
  7

• Imputation rate

  #193 opened 8 months ago by acty2323
  4

• ERROR: ERROR base sequences.

  #198 opened 8 months ago by Xinyi2796
  1

• Are imputed individuals included back into the reference panel?

  #199 opened 8 months ago by sahwa
  1

• GLIMPSE2_split_reference ERROR: AC/AN INFO fields in VCF are inconsistent with GT field, update the values in the VCF

  #189 opened a year ago by jpcartailler
  7

• Create referrence

  #194 opened 9 months ago by Sondr11
  2

• discordance in GLIMPSEv1 output genotypes between the two genotyping approaches

  #195 opened 9 months ago by CjeicaM
  1

• Fewer variants in the reference panel file downloaded from the GLIMPSE2 website

  #190 opened 9 months ago by acty2323
  2

• GLIMPSE2 - NIPT

  #192 opened 10 months ago by Sondr11
  3

• Measure for imputation accuracy

  #191 opened a year ago by sumudu-rangika
  1

• Questions about imputation

  #187 opened a year ago by acty2323
  1

• GLIMPSE2 : Called variants handling in output imputed data

  #183 opened a year ago by bpprins
  1

• error in glimpse phase step

  #185 opened a year ago by felassadi
  5

• Glimpse concordance missing columns

  #184 opened a year ago by LouisLeNezet
  1

• Glimpse 2 concordance: R2 per site contains only last chromosome

  #179 opened a year ago by saulpierotti
  1

• GLIMPSE1: ERROR: Parsing line 0 : incorrect number of columns, observed: 1 expected: 3

  #182 opened a year ago by whothis7
  2

• Question about input vcf files

  #181 opened a year ago by K-ayers
  1

• Concordance plot with GL

  #178 opened a year ago by chvbs2000
  6

• /usr/bin/ld: cannot find -ldeflate during GLIMPSE2_chunk compilation

  #176 opened a year ago by johannanvs
  2

• Invalid machine command

  #174 opened a year ago by whothis7
  5