Pinned Repositories
banana-book
Repo for a book on Bayesian capture-recapture w/ HMMs
bayesian-cr-workshop
Material for a workshop on Bayesian analysis of capture-recapture data with hidden Markov models and Nimble
bayesian-stats-with-R
Material for a workshop on Bayesian stats with R
Bayesian_Workshop
Material for a Bayesian statistics workshop
intro_spatialR
Introduction to GIS and mapping in R with the sf package
intro_tidyverse
Slides of my introduction to the Tidyverse
reproducible-science
material for teaching reproducible science with R and RStudio
reproducible-science-workshop
Material for a workshop on reproducible science with R and RStudio
statistics-for-ecologists-Master-courses
The material for a course on Statistics for ecologists I teach every year to Master students.
tidyverse-tips
Tidy notes I took from Dave Robinson's screencasts #TidyTuesday
oliviergimenez's Repositories
oliviergimenez/bayesian-stats-with-R
Material for a workshop on Bayesian stats with R
oliviergimenez/banana-book
Repo for a book on Bayesian capture-recapture w/ HMMs
oliviergimenez/oliviergimenez.github.io
My site, built with Hugo and Blogdown, and hosted on Github pages. Built and deployed with GitHub Actions from https://github.com/oliviergimenez/my_website repo.
oliviergimenez/popdyn-workshop
Website of workshop Quantitative Methods for Population Dynamics in R
oliviergimenez/appendix_capturerecapture_review
Analyses, R code and data for review of 2009-2019 research on capture-recapture
oliviergimenez/bayesian-hmm-cr-workshop-valencia
Material for a workshop on Bayesian analysis of capture-recapture data with hidden Markov models and Nimble
oliviergimenez/fitODEnimble
Fit ODEs to data with Nimble
oliviergimenez/spatial-stream-network-occupancy-model
Data, code and manuscript for 'Spatial occupancy models for data collected on stream networks'
oliviergimenez/lynx-id
Re-identify animals from cam trap images
oliviergimenez/NETDEM-workshop-survival-nimble
This repository holds the source materials used for a working group/symposium on capture-recapture models and social networks, and an introduction to capture-recapture models in nimble to estimate demographic parameters.
oliviergimenez/pyrenean-brown-bear-abundance
Code and data for the estimation of Pyrenean brown bear abundance
oliviergimenez/curated-list-HMM-apps
oliviergimenez/human-tursiops-twospeciesoccupancy
oliviergimenez/mecastat-in-julia
Julia code to fit mechanistic-statistical models w/ Bayes and MCMC
oliviergimenez/my_website
Source code of my website https://oliviergimenez.github.io/.
oliviergimenez/otterconnect
website of the otterconnect project
oliviergimenez/analyses_Lez
code et données pour papier sur la loutre et le Lez
oliviergimenez/class-repo
AEM 7130: Dynamic Optimization/Computational Methods
oliviergimenez/cloudwego.github.io
Website for CloudWeGo
oliviergimenez/dinov2
PyTorch code and models for the DINOv2 self-supervised learning method.
oliviergimenez/flex-matrix
flexdashboard/shiny matrix model
oliviergimenez/hair_website
Source code of Hair website https://human-animal-interactions.github.io/
oliviergimenez/HMM_with_TMB
A gentle tutorial of accelerated parameter and confidence interval estimation for Hidden Markov Models using Template Model Builder
oliviergimenez/hugo-minimal-theme
oliviergimenez/LaPreprint
📝 A nicely formatted LaTeX preprint template
oliviergimenez/lynxharvest_andren2020
oliviergimenez/occupancy-workshop
oliviergimenez/playing-with-RTMB
oliviergimenez/scr-connectivity
Assessing connectivity with spatial capture-recapture models and package oSCR
oliviergimenez/SiMRiv
Individual-based simulation of multistate movements in rivers, heterogeneous and homogeneous spaces incorporating local landscape bias in R