Pinned Repositories
banana-book
Repo for a book on Bayesian capture-recapture w/ HMMs
bayesian-cr-workshop
Material for a workshop on Bayesian analysis of capture-recapture data with hidden Markov models and Nimble
bayesian-stats-with-R
Material for a workshop on Bayesian stats with R
Bayesian_Workshop
Material for a Bayesian statistics workshop
intro_spatialR
Introduction to GIS and mapping in R with the sf package
intro_tidyverse
Slides of my introduction to the Tidyverse
reproducible-science
material for teaching reproducible science with R and RStudio
reproducible-science-workshop
Material for a workshop on reproducible science with R and RStudio
statistics-for-ecologists-Master-courses
The material for a course on Statistics for ecologists I teach every year to Master students.
tidyverse-tips
Tidy notes I took from Dave Robinson's screencasts #TidyTuesday
oliviergimenez's Repositories
oliviergimenez/occupancy_TMB
Illustrate how to fit dynamic occupancy model in TMB. Benchmarking vs. ADMB, Unmarked and JAGS.
oliviergimenez/ursus_Pyrenees_occupancy
Contains data and R code for paper on occupancy analyses of Brown bear habitat use in the Pyrenees
oliviergimenez/fitODEswithOpenBUGS
Illustrate how to fit ODEs to time-series data in OpenBUGS with R
oliviergimenez/estim_fitness
R and Jags codes to estimate fitness using capture-recapture data
oliviergimenez/GammaGompertzCR
Fit Gamma-Gompertz model to capture-recapture data using data cloning
oliviergimenez/indhet_in_CRmodels
Illustrate CR models with individual heterogeneity (multistate, random-effect, finite-mixture)
oliviergimenez/multieventRcpp
fitting multievent capture-recapture model with Rcpp
oliviergimenez/multistate_occupancy
Code to fit a multistate occupancy model with uncertainty in Jags
oliviergimenez/hmm_tmb
fitting multievent/hmm capture-recapture model with TMB
oliviergimenez/isec2018_tweet_analysis
Quick and dirty analyses of ISEC 2018 tweets
oliviergimenez/occupancy_in_ADMB
Illustrate how to fit dynamic occupancy model in ADMB. Benchmarking with Unmarked and JAGS.
oliviergimenez/phd-in-ecology-network
Produce the French academic network in ecology using data from these.fr
oliviergimenez/starwars_network
Social network analysis of Star Wars: The Attack of the Clones
oliviergimenez/strava
Create artistic visualisations with your exercise data
oliviergimenez/bimark
Analyse and simulate bilateral mark-recapture data with R
oliviergimenez/Blog
This repository contains codes for all of my blog posts since March 11 2015.
oliviergimenez/bycatch
Data and R code for reproducing "Protecting marine mammals, turtles, and birds by rebuilding global fisheries".
oliviergimenez/data-screencasts
Code from live exploratory analyses of data in R
oliviergimenez/deming2018
Presentation for Deming Conference in December 2018
oliviergimenez/examples
Web based appendices and tutorials for code used in published articles
oliviergimenez/fillmap
oliviergimenez/frrrenchies
Liste de ressources R utiles pour les Français
oliviergimenez/machine-learning-cheat-sheet
Classical equations and diagrams in machine learning
oliviergimenez/mnist-siamese-neural-network-for-R-code
mnist_siamese for R code
oliviergimenez/occ_balkanlynx
analyses for Balkan lynx paper
oliviergimenez/PortalData
Official Repo of the Portal Project Data
oliviergimenez/R2ucarehex
My attempts to create a logo for the R2ucare package
oliviergimenez/rstudio-conf-2019
Slide, code and data for "Applied Machine Learning" at Rstudio-conf 2019
oliviergimenez/simul_with_jags
Illustrate how to simulate data with Jags
oliviergimenez/Things-a-scientist-is-suppposed-to-know