Pinned Repositories
banana-book
Repo for a book on Bayesian capture-recapture w/ HMMs
bayesian-cr-workshop
Material for a workshop on Bayesian analysis of capture-recapture data with hidden Markov models and Nimble
bayesian-stats-with-R
Material for a workshop on Bayesian stats with R
Bayesian_Workshop
Material for a Bayesian statistics workshop
intro_spatialR
Introduction to GIS and mapping in R with the sf package
intro_tidyverse
Slides of my introduction to the Tidyverse
reproducible-science
material for teaching reproducible science with R and RStudio
reproducible-science-workshop
Material for a workshop on reproducible science with R and RStudio
statistics-for-ecologists-Master-courses
The material for a course on Statistics for ecologists I teach every year to Master students.
tidyverse-tips
Tidy notes I took from Dave Robinson's screencasts #TidyTuesday
oliviergimenez's Repositories
oliviergimenez/intro_spatialR
Introduction to GIS and mapping in R with the sf package
oliviergimenez/tidyverse-tips
Tidy notes I took from Dave Robinson's screencasts #TidyTuesday
oliviergimenez/bayesian-cr-workshop
Material for a workshop on Bayesian analysis of capture-recapture data with hidden Markov models and Nimble
oliviergimenez/reproducible-science-workshop
Material for a workshop on reproducible science with R and RStudio
oliviergimenez/R2ucare
R package to perform goodness-of-fit tests for capture-recapture models (and various manipulations)
oliviergimenez/computo-deeplearning-occupany-lynx
oliviergimenez/code_livre_variables_cachees
Annexes R Approche Statistiques pour les variables cachées en écologie coordonné par N. Peyrard et O. Gimenez
oliviergimenez/hmm-cr-nimble-isec2022-workshop
material for a workshop on Bayesian capture-recapture inference with hidden Markov models in Nimble
oliviergimenez/nimble-workshop
Material for a workshop on NIMBLE
oliviergimenez/note-information-nombre-loups
Matériel pour l'estimation du nombre de loups en France.
oliviergimenez/occupancy-crash-course
oliviergimenez/fit-glmm-with-brms
Fit GLMM with brms
oliviergimenez/monkseal-occupancy
Data and code for a paper on Med monk seal distribution in Greece
oliviergimenez/NETDEM-workshop-survival-nimble
This repository holds the source materials used for a working group/symposium on capture-recapture models and social networks, and an introduction to capture-recapture models in nimble to estimate demographic parameters.
oliviergimenez/published-202204-deeplearning-occupancy-lynx
"Trade-of between deep learning for species identication...", by Olivier Gimenez et al
oliviergimenez/pyrenean-brown-bear-abundance
Code and data for the estimation of Pyrenean brown bear abundance
oliviergimenez/topic-isec2022
oliviergimenez/DLhair
Slides for short talk on DL for our team
oliviergimenez/nimble
A repository to test and learn NIMBLE
oliviergimenez/analysesGeoloup
Analyse descriptive des patrons de déprédations en France
oliviergimenez/appendix_lynxIBM
Files with R code to run the lynx IBM.
oliviergimenez/bin-image-classif
Code for doing binary image classification using Keras in R.
oliviergimenez/King-Sarzo-and-Elvira.-2022.-When-Worlds-Collide
Code and data repository
oliviergimenez/matrix-models-workshop
Material for a workshop on matrix population models
oliviergimenez/presidentielle22
Analyse des résultats de la présidentielle 2022 par bureau de vote à Montpelier
oliviergimenez/ReID-Hippocampe
oliviergimenez/selbosh.github.io
Personal web site, "Tea & Stats", built with blogdown and Hugo
oliviergimenez/spaceNtime
Package with STE,TTE, and IS code
oliviergimenez/stoic2021-baseline
Baseline inference Algorithm for the STOIC2021 challenge.
oliviergimenez/ubms
Fit models to data from unmarked animals using Stan. Uses a similar interface to the R package 'unmarked', while providing the advantages of Bayesian inference and allowing estimation of random effects.