openbiox/UCSCXenaShiny
📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny_Book; App online: https://shiny.hiplot.cn/ucsc-xena-shiny/, https://shiny.zhoulab.ac.cn/UCSCXenaShiny
RGPL-3.0
Issues
- 5
样本id substr和重复问题
#349 opened by ShixiangWang - 7
Discrepancy in CNV Effect Class Distribution in UCSCXenaShiny Versions 2.1.0 and 2.2.0 versus UCSCXenaShiny v1.1.8
#347 opened by quiquemedina - 9
app_run2 模式下的资源加载问题
#341 opened by ShixiangWang - 7
- 2
考虑部署一个v1版本
#340 opened by ShixiangWang - 0
Cross Omics Analysis
#345 opened by lishensuo - 0
新增non-omics数据访问函数
#343 opened by lishensuo - 9
- 1
optimize
#323 opened by ShixiangWang - 7
GENE SIGNATURE FORMULA
#331 opened by Tardins - 2
get_pancan_gene_value() failed
#333 opened by 234pk - 0
app_run()报错
#335 opened by zxhu1987 - 5
Issue with Non-Numeric Arguments in Binary Operations in UCSCXenaShiny v2.0.0
#324 opened by quiquemedina - 2
- 2
Set group.var from string failed?
#317 opened by ShixiangWang - 5
部署更新
#294 opened by ShixiangWang - 1
输入栏切换
#284 opened by ShixiangWang - 4
Error in <reactive>: object '.opt_pancan' not found
#293 opened by Miachol - 0
Discussion about new option
#288 opened by ShixiangWang - 11
Pan-cancer analysis
#250 opened by xiw588 - 14
Issue with Accessing "cnv_gistic2" Data-type in UCSCXenaShiny v2.0.0 based on UCSCXenaTools v1.4.8
#286 opened by quiquemedina - 1
- 4
Recurrent Error with Composed Gene Symbols in Gene Signatures using XenaShiny
#283 opened by quiquemedina - 1
- 14
- 13
- 3
UCSCXenaShiny_issue Incorrect methylation data and plot last update version - Quick PanCan Analysis' feature, particularly in the TCGA Molecule to Molecule
#278 opened by quiquemedina - 5
Gene signatures failed to plot in hiplot and RStudio (ref. last version of UCSCXenaShiny v1.1.12 based on UCSCXenaTools v1.4.8)
#276 opened by quiquemedina - 1
General Analysis优化
#273 opened by ShixiangWang - 2
button layout
#271 opened by ShixiangWang - 13
- 5
SIGNATURES PROBLEMS FOR CCLE DATA
#267 opened by Tardins - 4
- 5
支持PCA分析
#246 opened by ShixiangWang - 1
某个待研究基因与 某个通路(癌通路?)的相关性 分析?
#248 opened by ShixiangWang - 5
Error in hiplot - Quick PanCancer analysis of the Stemness/TMI/MSI feature at https://shiny.hiplot.cn/ucsc-xena-shiny/
#259 opened by quiquemedina - 3
Is shiny.hiplot-academic.com down worldwide?
#258 opened by quiquemedina - 4
ZENODO DATA PROBLEMS
#256 opened by Tardins - 8
Error: Quick PanCan Analysis, TCGA: Association between Molecular Profile And TMB/Stemness/MSI (radar show)
#254 opened by quiquemedina - 3
Questions of pan-cancer TCGA gene expression data
#251 opened by xiw588 - 0
check issue
#253 opened by ShixiangWang - 2
Failure errors QuickPanCan Analysis CCLE: Drug response Association and CCLE: Drug response
#252 opened by quiquemedina - 1
支持下载多个基因的数据生成表格
#245 opened by ShixiangWang - 1
pcawg surv 模块没有 cancer type 分组
#249 opened by ShixiangWang - 0
mislabelled color mapping
#247 opened by ShixiangWang - 3
GDC TARGET-OS survival analysis – gene signature -WARNING MESSAGE The column you selected seems to have no valid data.
#244 opened by quiquemedina - 1
- 0
泛癌分析T-N对比去除无N的癌症类型
#241 opened by ShixiangWang - 1
Error in shinythemes::shinytheme("flatly")
#240 opened by victor-lopes2 - 2
Radar plot usage in R - Visualize Correlation between Gene and Tumor Stemness
#239 opened by quiquemedina