oracle5th

oracle5th's Stars

• Ensembl/ensembl-vep

  The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

  Language:Perl446151

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.8k503

• OSCA-source/OSCA.advanced

  Advanced steps of the OSCA book

  Language:TeX1110

• roboticcam/machine-learning-notes

  My continuously updated Machine Learning, Probabilistic Models and Deep Learning notes and demos (2000+ slides) 我不间断更新的机器学习，概率模型和深度学习的讲义(2000+页)和视频链接

  Language:Jupyter Notebook8.4k1.7k

• marbl/verkko

  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

  Language:Python28528

• KindXiaoming/pykan

  Kolmogorov Arnold Networks

  Language:Jupyter Notebook14.6k1.3k

• ycm-core/YouCompleteMe

  A code-completion engine for Vim

  Language:Python25.4k2.8k

• Falldog/pyconcrete

  Protect your python script, encrypt it as .pye and decrypt when import it

  Language:C695149

• WGLab/NanoCaller

  Variant calling tool for long-read sequencing data

  Language:Python988

• hrbrmstr/hrbrthemes

  :lock_with_ink_pen: Opinionated, typographic-centric ggplot2 themes and theme components

  Language:R1.2k96

• sdpython/mlinsights

  Extends scikit-learn with new models, transformers, metrics, plotting.

  Language:Python6913

• logancyang/loss-landscape-anim

  Create animations for the optimization trajectory of neural nets

  Language:Python13323

• suhrig/arriba

  Fast and accurate gene fusion detection from RNA-Seq data

  Language:C++22550

• ANHIG/IMGTHLA

  Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute

  Language:Parrot20060

• LKremer/ggpointdensity

  :chart_with_upwards_trend: :bar_chart: Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.

  Language:R40724

• ikamensh/flynt

  A tool to automatically convert old string literal formatting to f-strings

  Language:Python68333

• asottile/pyupgrade

  A tool (and pre-commit hook) to automatically upgrade syntax for newer versions of the language.

  Language:Python3.5k177

• ganglia/monitor-core

  Ganglia Monitoring core

  Language:C489245

• ganglia/ganglia-web

  Ganglia Web Frontend

  Language:PHP316169

• mamba-org/mamba

  The Fast Cross-Platform Package Manager

  Language:C++6.8k347

• PacificBiosciences/pbtk

  PacBio BAM toolkit

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• tanghaibao/jcvi

  Python library to facilitate genome assembly, annotation, and comparative genomics

  Language:Python742187

• matthewfeickert/Statistics-Notes

  Personal notes on statistics with a focus on applications to experimental high energy physics

  Language:Jupyter Notebook275

• cultivarium/MicrobeMod

  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing

  Language:Python361

• renkun-ken/formattable

  Formattable Data Structures

  Language:HTML69379

• r-lib/styler

  Non-invasive pretty printing of R code

  Language:R71671

• ikizhvatov/pysca

  Toolbox for advanced differential power analysis of symmetric key cryptographic algorithm implementations

  Language:Python4316

• wilkox/ggfittext

  🔠 ggplot2 geoms to fit text into boxes

  Language:R30418

• pwwang/plotnine-prism

  Prism themes for plotnine, inspired by ggprism.

  Language:Python142

• ponnhide/patchworklib

  Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.

  Language:Jupyter Notebook36624