orangeqqq

orangeqqq's Stars

• MWod/DeeperHistReg

  DeeperHistReg - Source Code

  Language:Jupyter Notebook151

• weigertlab/trackastra

  Language:Python427

• thuml/Time-Series-Library

  A Library for Advanced Deep Time Series Models.

  Language:Python5k848

• DLWK/CGRNet

  [BSPC22]The Code of “CGRNet: Contour-Guided Graph Reasoning Network for Ambiguous Biomedical Image Segmentation”

  Language:Python81

• MouseLand/cellpose

  a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

  Language:Jupyter Notebook1.2k360

• baubels/diffeomorphic_registration

  Image registration for diffeomorphically comparable shapes via neural nets. (paper implementation, done with Tensorflow).

  Language:Jupyter Notebook2

• Shenzhen-Yorktal/flare23

  code for FLARE 2023 challenge of the aladdin5 team

  Language:Python31

• ai-med/Vox2Cortex

  Language:Python5912

• smallmax00/Graph_Region_Boudnary

  IEEE-TMI 2021: code for 'Graph-based Region and Boundary Aggregation for Biomedical Image Segmentation'

  Language:Python262

• seung-lab/kimimaro

  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

  Language:C++12922

• HiLab-git/PA-Seg

  PA-Seg: Learning from Point Annotations for 3D Medical Image Segmentation using Contextual Regularization and Cross Knowledge Distillation

  Language:Python14

• hust-linyi/bonus

  Official implementation of the paper "BoNuS: Boundary Mining for Nuclei Segmentation with Partial Point Labels"

  Language:Python91

• guanyingc/latex_paper_writing_tips

  Tips for Writing a Research Paper using LaTeX

  Language:TeX2.3k295

• RivuletStudio/rivuletpy

  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

  Language:Python6516

• StanfordMIMI/clin-summ

  Clinical text summarization by adapting large language models

  Language:Python9713

• state-spaces/mamba

  Mamba SSM architecture

  Language:Python11.5k940

• LWHYC/OneShot_WeaklySeg

  Language:Python222

• ZJU-FAST-Lab/Fast-Drone-250

  hardware and software design of the 250mm autonomous drone

  Language:C++1.3k261

• pengsida/learning_research

  本人的科研经验

  4.8k295

• peng-zhihui/DeepVision

  在我很多项目中用到的CV算法推理框架应用。

  Language:Java1.9k386

• bowang-lab/U-Mamba

  U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation

  Language:Python56143

• TheAlgorithms/Python

  All Algorithms implemented in Python

  Language:Python182k44k

• JunMa11/SegWithDistMap

  How Distance Transform Maps Boost Segmentation CNNs: An Empirical Study

  Language:Python36866

• JunMa11/MICCAI-OpenSourcePapers

  MICCAI 2019-2023 Open Source Papers

  1.2k228

• BubblyYi/Coronary-Artery-Tracking-via-3D-CNN-Classification

  The PyTorch re-implement of a 3D CNN Tracker to extract coronary artery centerlines with state-of-the-art (SOTA) performance. (paper: 'Coronary artery centerline extraction in cardiac CT angiography using a CNN-based orientation classifier')

  Language:Python18040

• pkglimmer/CoronaryArteryCenterline

  Coronary artery centerline extraction from CT image (.mha format) 从心脏CT图像提取冠状动脉中心线

  Language:MATLAB407

• mhogg/pygeodesic

  Python library to compute geodesic distance over a triangular based surface mesh

  Language:C++762

• jeanfeydy/lddmm-ot

  MICCAI 2017 Paper - Optimal Transport for Diffeomorphic Registration

  Language:Python5112

• charlesnchr/ERnet-v2

  Segmentation and analysis of the endoplasmic reticulum facilitated by a vision transformer segmentation model

  Language:Jupyter Notebook101

• GUDHI/TDA-tutorial

  A set of jupyter notebooks for the practice of TDA with the python Gudhi library together with popular machine learning and data sciences libraries.

  Language:Jupyter Notebook347108