Pinned Repositories
JARM
JNK3 activation reaction model
n_monomers_itano
PyDREAM
MT-DREAM(ZS) algorithm for model optimization, calibration, selection
pydyno
Tool that uses tropical algebra concepts to 'decompose' species trajectories in the protein-protein interactions that drive changes of concentration in time
pyvipr
Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
arviz
Exploratory analysis of Bayesian models with Python
bmif_6319_class
Jupyter notebooks for BMIF 6319 class
pypi-upload-action
Github action to upload a python package to PyPI
qsb
pysb
Python framework for Systems Biology modeling
ortega2247's Repositories
ortega2247/pypi-upload-action
Github action to upload a python package to PyPI
ortega2247/qsb
ortega2247/arviz
Exploratory analysis of Bayesian models with Python
ortega2247/bmif_6319_class
Jupyter notebooks for BMIF 6319 class
ortega2247/conda-package-publish-action
Github Action to deploy conda package to Anaconda repository
ortega2247/covid_colombia
ortega2247/cytoscape-jupyter-widget
Cytoscape.js based network visualizer for Jupyter Notebook
ortega2247/cytoscape-sbgn-stylesheet
View biological networks via Cytoscape.js and sbgn-ml
ortega2247/earm_pydyno
Analysis of dominant reaction rates of the extrinsic apoptosis reaction model (EARM) under different initial conditions
ortega2247/imani
imani website
ortega2247/jarm_discretization
Analysis of JARM
ortega2247/kmedoids
The Python implementation of k-medoids.
ortega2247/Marion_project
ortega2247/ortega2247.github.io
ortega2247/pydream_it
Read PySB models and generate a script for PyDREAM calibration
ortega2247/pydyno_paper
Repo of pydyno with 3 different example models
ortega2247/python-helloworld
ortega2247/pyvipr
Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
ortega2247/sif.js
A javascript library to parse simple interaction file (SIF) files
ortega2247/simplePSO
Particle Swarm Optimization algorithm in Python
ortega2247/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
ortega2247/vanderbilt-aspire-data-essentials
8 week introduction to data science