Pinned Repositories
Alternative_events
Alternative trasncriptional and splicing events
Analysing-COVID-19-datasets-using-Applied-Statistics
Final project of Applied Data Mining - STAT.
ARACNe-plots
Make network plots from ARACNe output
ATAC_Chip-seq
bioinfo-tools
Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
cell2sentence-ft
Cell2Sentence turns scRNA-seq data into text for LLM training.
COVID-19-classifier
Transfer learning approach was used to train one dataset and classify images into COVID-19 positive and other classes. The models used were based on the VGG framework (VGG16 and VGG19).
createpkg_R
For HW7 for ANGSD, creating an R package
RNA-velocity-analysis
RNA Velocity in Single cells - An analysis of Publicly available datasets.
TransTEx
R package for TransTEx: Novel tissue-specificity scoring method for grouping human transcriptome in-to different expression groups
pallavisurana1's Repositories
pallavisurana1/TransTEx
R package for TransTEx: Novel tissue-specificity scoring method for grouping human transcriptome in-to different expression groups
pallavisurana1/ATAC_Chip-seq
pallavisurana1/Alternative_events
Alternative trasncriptional and splicing events
pallavisurana1/Analysing-COVID-19-datasets-using-Applied-Statistics
Final project of Applied Data Mining - STAT.
pallavisurana1/ARACNe-plots
Make network plots from ARACNe output
pallavisurana1/bioinfo-tools
Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
pallavisurana1/cell2sentence-ft
Cell2Sentence turns scRNA-seq data into text for LLM training.
pallavisurana1/COVID-19-classifier
Transfer learning approach was used to train one dataset and classify images into COVID-19 positive and other classes. The models used were based on the VGG framework (VGG16 and VGG19).
pallavisurana1/createpkg_R
For HW7 for ANGSD, creating an R package
pallavisurana1/Ct-Mark-Mut
Mutation Data for marker genes of a Cell Type
pallavisurana1/cut-run
This consists of scripts to analyze ChIp Cut and Run sequencing data.
pallavisurana1/RNA-velocity-analysis
RNA Velocity in Single cells - An analysis of Publicly available datasets.
pallavisurana1/dbSNP-text-summarization
pallavisurana1/DNABERT
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
pallavisurana1/env-setup
A guide for setting up R or Python environment on a Linux/HPC cluster.
pallavisurana1/ExTraMapper
ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequence conservation.
pallavisurana1/foss-reference-hub
pallavisurana1/GDC_Client
How to use GDC client to download the data from GDC portal
pallavisurana1/GLBIO-2024
GLBIO 2024: Applications of Generative AI, LLMs, and Traditional Machine Learning for Personalized Medicine and Drug Discovery workshop.
pallavisurana1/InteractiveComplexHeatmap
Make Interactive Complex Heatmaps
pallavisurana1/Llama2-Medical-Chatbot
This is a medical bot built using Llama2 and Sentence Transformers. The bot is powered by Langchain and Chainlit. The bot runs on a decent CPU machine with a minimum of 16GB of RAM.
pallavisurana1/SCA1_snRNAseq_CB
Longitudinal single-cell transcriptional dynamics throughout neurodegeneration in SCA1
pallavisurana1/scGPT
pallavisurana1/tumor_deconvolution_application
Tumor deconvolution code used for mutant EGFR cell of origin paper
pallavisurana1/webgen
WebGen Vertically Integrated Project