pangenome/smoothxg

Issues

• Performance when unchopping large graphs

  #209 opened 6 months ago by sivico26
  0

• Compile SMOOTHXG for different SIMD architectures

  #208 opened 8 months ago by subwaystation
  0

• How to understand the optimisation goals of smoothxg

  #204 opened a year ago by YX-Xiang
  1

• [RELEASE] - Please make a new v0.7.1 release

  #199 opened a year ago by subwaystation
  1

• Change on CLI on v0.7.0

  #189 opened 2 years ago by sivico26
  1

• "Error in cg_backtrack" strikes again

  #184 opened 2 years ago by sivico26
  4

• "Assertion `idx <this->size()' failed" interpretation

  #182 opened 2 years ago by sivico26
  2

• Generate consensus from smoothed graph

  #177 opened 2 years ago by BaxW
  1

• How to understand the option '--consensus-spec'

  #153 opened 3 years ago by biozzq
  1

• `-v/--version` should print to stdout instead of stderr

  #171 opened 2 years ago by subwaystation
  1

• smoothxg crashes with signal 7

  #161 opened 2 years ago by cgroza
  8

• zstdutil.hpp:14:10: fatal error: zstd.h: No such file or directory

  #167 opened 3 years ago by bredeson
  2

• Provide version number in --help or add new --version argument

  #147 opened 3 years ago by heuermh
  1

• [FEATURE]: Read and write GBZ instead of GFA

  #149 opened 3 years ago by subwaystation
  0

• can't checkout deps/spoa commit hash

  #125 opened 4 years ago by maximilianpress
  2

• Installation problems

  #80 opened 4 years ago by evolgen
  7

• Parameters for whole human genome.

  #98 opened 4 years ago by cgroza
  10

• Seg fault while generating consensus paths

  #44 opened 4 years ago by brettChapman
  4

• strange consensus paths

  #7 opened 4 years ago by Nheyer
  7

• Multiple consensus paths

  #37 opened 4 years ago by brettChapman
  2

• smoothxg takes gap "-" in the sequence or not

  #46 opened 4 years ago by XuewenWangUGA
  3

• smoothxg seems to think my xg index is version 33708103

  #3 opened 4 years ago by Nheyer
  10

• Smoothing of a cactus graph more aggressively

  #4 opened 4 years ago by egoltsman
  4

• error middle of smooth and lace

  #65 opened 4 years ago by cistarsa
  9

• non-sudoer build error

  #64 opened 4 years ago by cistarsa
  0

• -b and -K are incompatible

  #18 opened 4 years ago by ekg
  0

• Smoothxg error during poa alignment to subgraph

  #19 opened 4 years ago by brettChapman
  4

• smoothxg throws what(): basic_string::_M_construct null not valid

  #16 opened 4 years ago by cgroza
  11

• what(): std::bad_alloc (improve memory usage patterns)

  #6 opened 4 years ago by ekg
  15

• GCSA on smoothxg GFAs

  #5 opened 4 years ago by fbemm
  2

• Error during run of smoothxg

  #2 opened 4 years ago by brettChapman
  3

• Cmake error

  #1 opened 4 years ago by egoltsman
  4