patrickbryant1/Umol

Issues

• ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (1313,) + inhomogeneous part.

  #25 opened 3 months ago by sgrigna79
  1

• How to output more predicted poses

  #20 opened 9 months ago by Zehui7Zhou
  3

• About the num_ligand_atoms

  #34 opened 5 months ago by fuxuliu
  1

• Why are the following packages not available from the current channels?

  #35 opened 4 months ago by mrqfliu
  0

• 'Config' object has no attribute 'define_bool_state'

  #23 opened 4 months ago by aliaclarkelsayed
  6

• About the FAPE loss

  #33 opened 5 months ago by fuxuliu
  3

• [question]: Around training the model.

  #29 opened 5 months ago by alexanderbonnet
  5

• Docker to run it

  #17 opened 10 months ago by smilenaderi
  9

• Colab crashes due to error in Install dependencies step

  #31 opened 6 months ago by Sinsilcobio
  1

• RecursionError: maximum recursion depth exceeded

  #32 opened 6 months ago by vecos1990
  1

• FileNotFoundError

  #30 opened 6 months ago by vecos1990
  0

• conda enviroment problem

  #27 opened 6 months ago by sheng19331
  8

• Can Umol take 1 protein and 2 small molecules at the same time?

  #24 opened 6 months ago by Yang-Wang-2020
  1

• Error during conda env creation

  #19 opened 6 months ago by isty2e
  1

• Error 'bash predict.sh'

  #26 opened 6 months ago by Dong-HoSeo
  1

• Predict ligand positions for large protein by multiple GPUs

  #28 opened 6 months ago by whl-git
  1

• Environment failed to resolve

  #22 opened 7 months ago by aliaclarkelsayed
  2

• Some question about giant Protein

  #21 opened 8 months ago by AlvinLeopold
  1

• Can ligand be inputted via sdf files instead of LIGAND_SMILES format?

  #18 opened 9 months ago by CykaZH
  6

• colab Umol "predict the protein-ligand complex structure" cell

  #12 opened 10 months ago by FJ0M
  1

• colab notebook error in prediction step

  #16 opened 10 months ago by biotech70
  7

• Selection of the interaction sites and pLDTT score

  #15 opened a year ago by velocirraptor23
  4

• ValueError: operands could not be broadcast together with shapes (19,19) (2861,2861)

  #14 opened a year ago by AlvinLeopold
  3

• When run the 'predict.sh', how to use GPU to accelerate it

  #13 opened a year ago by CykaZH
  1

• Different models

  #8 opened a year ago by velocirraptor23
  1

• Target pos

  #9 opened a year ago by LiviaPham
  8

• FutureWarning: jax.tree_flatten is deprecated, and will be removed in a future release. Use jax.tree_util.tree_flatten instead.

  #10 opened a year ago by mainguyenanhvu
  1

• IndexError: list index out of range, while created a new protein

  #7 opened a year ago by velocirraptor23
  6

• Multiple chains in protein sequence

  #4 opened a year ago by rajatpunia
  1

• limit in protein length or msa sequence number?

  #5 opened a year ago by Yogesh1-11
  3

• Predict the protein-ligand structure Error

  #2 opened a year ago by SarahKnapp1
  1

• Training Protocol

  #3 opened a year ago by hypefolder
  1

• Sequence Length Limit

  #1 opened a year ago by drewnutt
  1