Pinned Repositories
AFProfile
Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
ageing_of_blood_and_brain
Assessing the relationship between ageing and changes in the human blood and brain methylomes.
Cfold
Structure prediction of alternative protein conformations
COVID19.github.io
Supervised machine learning for decoposing decision making in the COVID19 outbreak.
EvoBind
In silico directed evolution of peptide binders with AlphaFold
MHCII
Code for predicting the binding affinity of different MHC-II complexes to peptides of varying lengths in terms of ic50.
MoLPC
Modelling of Large Protein Complexes
SpeedPPI
Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
TransPep
Learning biological features of signal peptides with transformer neural networks.
Umol
Protein-ligand structure prediction
patrickbryant1's Repositories
patrickbryant1/Umol
Protein-ligand structure prediction
patrickbryant1/EvoBind
In silico directed evolution of peptide binders with AlphaFold
patrickbryant1/SpeedPPI
Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
patrickbryant1/Cfold
Structure prediction of alternative protein conformations
patrickbryant1/AFProfile
Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
patrickbryant1/MoLPC
Modelling of Large Protein Complexes
patrickbryant1/TransPep
Learning biological features of signal peptides with transformer neural networks.
patrickbryant1/COVID19.github.io
Supervised machine learning for decoposing decision making in the COVID19 outbreak.
patrickbryant1/MHCII
Code for predicting the binding affinity of different MHC-II complexes to peptides of varying lengths in terms of ic50.
patrickbryant1/ageing_of_blood_and_brain
Assessing the relationship between ageing and changes in the human blood and brain methylomes.
patrickbryant1/epidemic_net
Models the spread of COVID19 on a social network.
patrickbryant1/infection_biology_ws
Exercises for AI Applications in Infection Biology
patrickbryant1/OXMatch
A simple script for matching sequences from two different MSAs based on the OX identifiers resulting from an hhblits search.
patrickbryant1/patrickbryant1.github.io
patrickbryant1/ptb_rnn
A recurrent neural network of stacked LSTMs that predict text sequences using the Penn Treebank dataset.
patrickbryant1/adsmeproj
Assembly of spruce chloroplast
patrickbryant1/Advanced-AI-Techniques-in-Biological-Systems
Advanced AI Techniques in Biological Systems - part of DDLS
patrickbryant1/alignment_free_structural_classification
Studying the protein structure universe by embedding structural homology groups from CATH
patrickbryant1/AMR_spread
Tracking the spread of AMR across Europe
patrickbryant1/ARCENE
A deep CNN for evaluating the ARCENE dataset
patrickbryant1/BL8064
Mutations in interfaces?
patrickbryant1/CMM
Code written at CMM
patrickbryant1/coevolve
A repository for performing coevolutionary analysis of large datasets.
patrickbryant1/gpt-2
Code for the paper "Language Models are Unsupervised Multitask Learners"
patrickbryant1/histopath_cancer
A CNN for identifying cancer in histopathological images.
patrickbryant1/miga
MIGA is a Python package that provides a MSA (Multiple Sequence Alignment) mutual information genetic algorithm optimizer. It sorts two MSAs in a way that maximize or minimize their mutual information. The genetic algorithm solvers may run on both CPU and Nvidia GPUs.
patrickbryant1/variation_interpretation
Code for variant interpretation
patrickbryant1/xprize_covid
Predictor and Prescriptor models for the covid xprize challenge.