pbeerli

bugsinbox

Bugs in a box -- an analogy to the coalescent [teaching tool]

currentprotocols

data for current protocols tutorial

dataconverters

Repository for python converter that takes a MIGRATE data file and converts it to other data-formats

divergencesupplement

Supplement to Population divergence time estimation using individual lineage label switching, contains raw data filesMath explanations and

doi2bib

fractcoalsim

simulation of trees and TMRCA of fractional coalescent with two populations

fractional-coalescent-material

All material to produce the figures and tables in a paper titled "The fractional coalescent"

migrate-5-git

Putting version 5.0.x under git control on github

popsim

Python script to generate graphs of single populations through time allowing for different models, growth, shrinkage

popvizard

tool to visualize a population with various condition (growth, bottlenecks, Wright-Fisher, Moran, Canning)

pbeerli/bugsinbox

Bugs in a box -- an analogy to the coalescent [teaching tool]

pbeerli/fractional-coalescent-material

All material to produce the figures and tables in a paper titled "The fractional coalescent"

pbeerli/currentprotocols

data for current protocols tutorial

pbeerli/dataconverters

Repository for python converter that takes a MIGRATE data file and converts it to other data-formats

pbeerli/divergencesupplement

Supplement to Population divergence time estimation using individual lineage label switching, contains raw data filesMath explanations and

pbeerli/doi2bib

pbeerli/popsim

Python script to generate graphs of single populations through time allowing for different models, growth, shrinkage

pbeerli/popsimulate

Simulator of population genetics data allowing for multiple populations and immigration

pbeerli/fractcoalsim

simulation of trees and TMRCA of fractional coalescent with two populations

pbeerli/migrate-5-git

Putting version 5.0.x under git control on github

pbeerli/popvizard

tool to visualize a population with various condition (growth, bottlenecks, Wright-Fisher, Moran, Canning)

pbeerli/bioconda-recipes

Conda recipes for the bioconda channel.

pbeerli/ISC-3313

ISC-3313: Introduction to Scientific Computing (Summer2020 & Summer2021)

pbeerli/isc5317

python material for computational evolutionary biology class at FSU

pbeerli/migrate-documentation

manual for the software migrate

pbeerli/mittag_leffler_code

pbeerli/momi2

Infer demographic history with the Moran model

pbeerli/mushi

[mu]tation [s]pectrum [h]istory [i]nference

pbeerli/Sequence-manipulation

A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats

pbeerli/simulations_for_topiccontml

This repository describes the tools needed to construct the simulated data used for the package TopicContml by Marzieh (Tara) Khodaei

pbeerli/speciessimulate

pbeerli/stdpopsim

A library of standard population genetic models