pbrazda

pbrazda's Stars

• trekhleb/homemade-machine-learning

  🤖 Python examples of popular machine learning algorithms with interactive Jupyter demos and math being explained

  Language:Jupyter Notebook23.2k938274.1k

• z3tt/TidyTuesday

  My contributions to the #TidyTuesday challenge, a weekly data visualization challenge. All plots are 💯 created in R with ggplot2.

  Language:R771794144

• agitter/single-cell-pseudotime

  An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

  41033162

• dylkot/cNMF

  Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

  Language:Jupyter Notebook27969658

• iSEE/iSEE

  R/shiny interface for interactive visualization of data in SummarizedExperiment objects

  Language:R2241820842

• adamribaudo/storytelling-with-data-ggplot

  Recreation of Cole Nussbaumer Knaflic's Storytelling with Data plots using R an ggplot2

  Language:R21516066

• GregorySchwartz/too-many-cells

  Cluster single cells and analyze cell clade relationships with colorful visualizations.

  Language:Haskell10535218

• yanwu2014/swne

  Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets

  Language:R10552819

• 10XGenomics/loupeR

  Convert Seurat objects to 10x Genomics Loupe files.

  Language:R102105315

• Sijin-ZhangLab/PanMyeloid

  Language:R931231

• powellgenomicslab/Nebulosa

  R package to visualize gene expression data based on weighted kernel density estimation

  Language:R895258

• akdess/CaSpER

  Language:R7978528

• carmonalab/STACAS

  R package for semi-supervised single-cell data integration

  Language:R775329

• GreenleafLab/MPAL-Single-Cell-2019

  Publication Page for MPAL Paper 2019

  Language:R77132539

• ncborcherding/Trex

  Using TCR and expression for sequence embedding

  Language:R486122

• PCAWG-11/Heterogeneity

  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

  Language:R42517

• matanhofree/crc-immune-hubs

  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organized multicellular immune hubs in human colorectal cancer"

  Language:Jupyter Notebook39544

• naikai/sake

  sake

  Language:HTML27106912

• gangwug/MetaCycle

  An integrated R package to evaluate periodicity in large scale data

  Language:R2671215

• vanheeringen-lab/scepia

  Single Cell Epigenome-based Inference of Activity

  Language:Jupyter Notebook194112

• carmonalab/TILPRED

  Tumor-Infiltrating CD8 Lymphocytes states prediction

  Language:R12213

• rethomics/zeitgebr

  Circadian rhythm analysis and visualisation in R

  Language:R112167

• milanjanosov/Success-and-randomness-in-creative-careers

  Supplementary data and figures for the paper 'Success and randomness in creative careers' published in EPJ Data Science

  Language:Jupyter Notebook10101

• hdsu-bioquant/project_NB_SE

  Neuroblastoma SE landscape project

  Language:HTML63134

• poltextlab/HunMineR

  Companion package for the Hungarian text mining textbook

  Language:R4311

• artem-artemov/adrenal

  Human adrenal gland paper

  Language:Jupyter Notebook3113

• gbiro/KutInf_gyak

  Language:TeX3402

• UMCCR-RADIO-Lab/snRNA-seq-atlas-of-pheochromocytoma-and-paraganglioma

  Language:R3111

• laloumdav/rhythm_detection_benchmark

  Language:HTML2201

• RichardBJ/TMML_RBJ_Play

  3 Minutes Machine Learning

  Language:Jupyter Notebook1000