pcastellanoescuder
Bioinformatician at Duke University. Multi-omics | Machine Learning | AI
Duke Molecular Physiology InstituteDurham, NC, USA
Pinned Repositories
axolotr
The axolotr package provides a unified interface for interacting with various Language Model APIs, including OpenAI's GPT, Google's Gemini, Anthropic's Claude, and Groq's API. It allows users to easily switch between different LLMs and leverage their capabilities for a wide range of natural language processing tasks.
gaudi
🧩 Group Aggregation via UMAP (multi-omics) Data Integration
umap_multiomics_integration
📊 Multi-omics Integration Benchmarking: This repository benchmarks GAUDI against state-of-the-art multi-omics integration methods for cancer research
fobitools
:package: Tools for Manipulating FOBI Ontology
FoodBiomarkerOntology
:rocket: Food-Biomarker Ontology defines the relationships between foods and their associated metabolites (biomarkers) through a formal ontology
Good_Practices_in_Software_Development
Presentation about "good practices" in (statistical) software development
Lheuristic
A shiny app to select L-shaped genes using a heuristic algorithm
POMA
:package: Omics Data Analysis Tools
POMAcounts
:apple: Web-based Application for Exploratory and Statistical Analysis of Mass Spectrometry Spectral Counts Data
POMAShiny
:apple: Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
pcastellanoescuder's Repositories
pcastellanoescuder/Shiny_Dashboard_Template
This is an example about how to build a shiny app using dashboard and plotly
pcastellanoescuder/Twitter_Analysis_with_R
Analysis of Twitter accounts of the main political leaders in Spain before the elections of April 28, 2019
pcastellanoescuder/blogdown_slides
Brief seminar about how to make websites with blogdown R package
pcastellanoescuder/Metabolomic_Tools
Summary of the most used tools for statistical and enrichment analysis in metabolomics