Pinned Repositories
awesome-machine-learning
A curated list of awesome Machine Learning frameworks, libraries and software.
bridgedb-r
R package for BridgeDB.
CNTK
Microsoft Cognition Toolkit (CNTK)
ComplexViz
Plugin for PathVisio for integrative visualization of complex component data on the complex nodes.
CuratorTool
data-factory-r-server-apache-spark-pipeline
This tutorial highlights how to build a scalable machine-learning based data processing pipeline using Microsoft R Server with Apache Spark utilizing Azure Data Factory (ADF)
datasciencecoursera
This repo contains the files related to the Coursera Data Science Specialization
Layouts
A PathVisio plugin which implements several layout algorithms. Currently implemented layouts include, SBML Layout (http://sbmllayout.sourceforge.net/SBMLLayout/Welcome.html) and Force directed Layout (http://opentutorials.cgl.ucsf.edu/index.php/Tutorial:Introduction_to_Cytoscape#Force-Directed_Layout)
pennatula's Repositories
pennatula/ComplexViz
Plugin for PathVisio for integrative visualization of complex component data on the complex nodes.
pennatula/Layouts
A PathVisio plugin which implements several layout algorithms. Currently implemented layouts include, SBML Layout (http://sbmllayout.sourceforge.net/SBMLLayout/Welcome.html) and Force directed Layout (http://opentutorials.cgl.ucsf.edu/index.php/Tutorial:Introduction_to_Cytoscape#Force-Directed_Layout)
pennatula/awesome-machine-learning
A curated list of awesome Machine Learning frameworks, libraries and software.
pennatula/bridgedb-r
R package for BridgeDB.
pennatula/CNTK
Microsoft Cognition Toolkit (CNTK)
pennatula/CuratorTool
pennatula/data-factory-r-server-apache-spark-pipeline
This tutorial highlights how to build a scalable machine-learning based data processing pipeline using Microsoft R Server with Apache Spark utilizing Azure Data Factory (ADF)
pennatula/datasciencecoursera
This repo contains the files related to the Coursera Data Science Specialization
pennatula/FYI
Find your interactions in PathVisio.
pennatula/Medcoin-Crypto-Currency-Project
A Git Hub repo showing the progress of the Medcoin™ Crypto Currency from inception to date
pennatula/nob-hq
Administrative repository for the Network of BioThings
pennatula/opencpu
OpenCPU system for embedded scientific computation and reproducible research
pennatula/PathVisioWithInteractionSupport
This version of the PathVisio (http://www.pathvisio.org/) application works with the new interaction annotation database. The annotation database can be created using the code from https://github.com/pennatula/InteractionDB.git.
pennatula/pennatula.github.com
My personal website.
pennatula/PlantUploader
Uploader for plant pathways
pennatula/reactome2gpml-converter
Converts Reactome pathways to GPML format
pennatula/reactomeComplexResolution
A quick fix to resolve Reactome complexes for the conversion to GPML
pennatula/RPathVisio
R package for PathVisioRPC
pennatula/RWikiPathways
R package to connect to the WikiPathways web service and the SPARQL endpoint of WikiPathways
pennatula/SBML-importer-plugin
SBML importer Plugin for PathVisio allows researchers to visualize and overlay data on the same pathway models which they use in simulation experiments
pennatula/shiny-examples
pennatula/SQL-Server-R-Services-Samples
Advanced analytics samples and templates using SQL Server R Services
pennatula/twitter-bootstrap-hover-dropdown
An unofficial Twitter Bootstrap plugin to enable Twitter Bootstrap dropdowns to activate on hover and provide a nice user experience.
pennatula/Utilities
Useful script for random things
pennatula/WPpsimiCoverter
Obtain Interactions from WikiPathways in a PSI-MITAB format
pennatula/WPWS
Scripts to get information from WikiPathways pathways, such as number of genes, proteins, metabolites, interactions etc.
pennatula/write-good
Naive linter for English prose