pinellolab/dictys

dictys_helper

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nikithkurella commented

Hello,

I've installed Dictys via Anaconda as written in the instructions. However, upon running the tutorial notebooks, I get an error indicating that the dictys_helper command is not found. How would I go about getting this set up? Thank you.

lingfeiwang commented
nikithkurella commented

Hi @lingfeiwang

I tried using the provided container image and the dictys_helper command is recognized. However, I am trying to run dictys on my HPC and take advantage of GPU computation. I've installed dictys on my HPC using:


wget https://tinyurl.com/dictys -O - | CUDAVERSION_CONDA=11.7 bash

I have not set PATH, which may be why dictys_helper is not recognized. Would you be able to describe how to do so?

lingfeiwang commented

Hi nikithkurella. I just tested this method on a clean ubuntu docker image and it worked well. You do not need any extra setting including PATH. Can you provide a minimal shell script to reproduce your issue on a clean docker OS image, such as https://hub.docker.com/_/ubuntu?

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