pmenzel
Bioinformatics Scientist at @LaborBerlin, prev at MDC Berlin, KU.dk, Uni Leipzig
@LaborBerlin Berlin
pmenzel's Stars
tseemann/barrnap
:microscope: :leo: Bacterial ribosomal RNA predictor
JamesIves/github-pages-deploy-action
🚀 Automatically deploy your project to GitHub Pages using GitHub Actions. This action can be configured to push your production-ready code into any branch you'd like.
pmenzel/kiq
K-mer indexing and querying in RNA-Seq data
metagenome-atlas/atlas
ATLAS - Three commands to start analyzing your metagenome data
andrewjpage/tiptoft
Predict plasmids from uncorrected long read data
ktmeaton/ncov-recombinant
Reproducible workflow for SARS-CoV-2 recombinant sequence detection.
pmenzel/illumina-assembly-snake
Snakemake wrapper for bacterial genome assembly from Illumina reads.
pmenzel/gh-actions
workflows for GitHub Actions
ikatyang/emoji-cheat-sheet
A markdown version emoji cheat sheet
MrOlm/drep
Rapid comparison and dereplication of genomes
jamesotto852/ggdensity
An R package for interpretable visualizations of bivariate density estimates
rhysnewell/aviary
A hybrid assembly and MAG recovery pipeline (and more!)
apache/arrow
Apache Arrow is a multi-language toolbox for accelerated data interchange and in-memory processing
cazzlewazzle89/FANGORN
Full-length Amplicons for the Next Generation Of rRNa analysis
lskatz/advent-of-code
https://adventofcode.com/
MultiQC/MegaQC
Web application to collect and visualise data across multiple MultiQC runs.
ncbi/sra-human-scrubber
An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and outputs the edited (cleaned) fastq file that can safely be used for SRA submission.
kamimrcht/ELECTOR
ELECTOR: EvaLuator of Error Correction Tools for lOng Reads
filebrowser/filebrowser
📂 Web File Browser
pachterlab/gget
🧬 gget enables efficient querying of genomic reference databases
zinen/docker-alpine-pigpiod
Base for a tiny docker image containing pigpio. Aims to support all models of raspberry pi.
epi2me-labs/kraken2-server
Kraken2 Server
bugy/script-server
Web UI for your scripts with execution management
awesome-stable-diffusion/awesome-stable-diffusion
Curated list of awesome resources for the Stable Diffusion AI Model.
AUTOMATIC1111/stable-diffusion-webui
Stable Diffusion web UI
reptalex/phylofactor
TravisWheelerLab/AvxWindowFmIndex
A fast, AVX2 and ARM Neon accelerated FM index library
lh3/miniprot
Align proteins to genomes with splicing and frameshift
jodyphelan/NTM-Profiler
Profiling NTM WGS data
minimaxir/aitextgen
A robust Python tool for text-based AI training and generation using GPT-2.