pmenzel
Bioinformatics Scientist at @LaborBerlin, prev at MDC Berlin, KU.dk, Uni Leipzig
@LaborBerlin Berlin
pmenzel's Stars
comfyanonymous/ComfyUI
The most powerful and modular diffusion model GUI, api and backend with a graph/nodes interface.
wagoodman/dive
A tool for exploring each layer in a docker image
WerWolv/ImHex
🔍 A Hex Editor for Reverse Engineers, Programmers and people who value their retinas when working at 3 AM.
Stirling-Tools/Stirling-PDF
#1 Locally hosted web application that allows you to perform various operations on PDF files
Mintplex-Labs/anything-llm
The all-in-one Desktop & Docker AI application with built-in RAG, AI agents, and more.
charmbracelet/glow
Render markdown on the CLI, with pizzazz! 💅🏻
Cinnamon/kotaemon
An open-source RAG-based tool for chatting with your documents.
Orange-OpenSource/hurl
Hurl, run and test HTTP requests with plain text.
stanford-oval/storm
An LLM-powered knowledge curation system that researches a topic and generates a full-length report with citations.
eradman/entr
Run arbitrary commands when files change
passbolt/passbolt_docker
Get started with Passbolt CE using docker!
ablab/spades
SPAdes Genome Assembler
vedmack/yadcf
Yet Another DataTables Column Filter (yadcf)
LaPreprint/LaPreprint
📝 A nicely formatted LaTeX preprint template
kassambara/rstatix
Pipe-friendly Framework for Basic Statistical Tests in R
kcleal/gw
Genome browser and variant annotation
thegenemyers/FASTGA
Pairwise whole genome aligner
shenwei356/LexicMap
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
xxsds/sdsl-lite
Succinct Data Structure Library 3.0
rcedgar/usearch12
Open-source usearch
refresh-bio/vclust
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
JensUweUlrich/Taxor
Fast and space-efficient taxonomic classification of long reads
denglab/SeqSero2
SeqSero2
JustinChu/ntsm
This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to compute the probability that sample are of the same origin to discover incongruent samples or sample swaps.
jgans/thermonucleotideBLAST
Searching DNA/RNA sequence databases with PCR and/or probe queries
iqbal-lab-org/viridian
jsevo/taxumap
appliedbinf/el_gato
tongzhouxu/mashpit
:pencil: Sketch-based surveillance platform
MathiasEskildsen/ONT-AmpSeq
Snakemake workflow to generate OTU tables from barcoded ONT data