ncbi/sra-human-scrubber
An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and outputs the edited (cleaned) fastq file that can safely be used for SRA submission.
ShellNOASSERTION
Stargazers
- alienzjGPG
- arodzh-sudoPuerto Rico Public Health Laboratory
- audy@OneCodex
- bedeOxford Nanopore Technologies
- BiologicalScientist
- bjklab
- bluegenesSan Diego, CA
- boulundKarolinska Institutet
- chrisgulvikUSA
- cimendes@theiagen
- colindavenGermany
- embatty
- francescopatane96SynBio, University of Padova
- genomicsITERITER
- Hua-clearlabs
- IsabelFEBaylor College of Medicine
- jeff-cohereCohere Consulting LLC
- kapsakcj@theiagen
- lebarsarthurInstitut Français de Bioinformatique
- LeeBergstrand@Amplytica Inc.
- llk578496
- lmc297Umeå University
- MADscientist314Baylor College of Mediciine
- mbhall88University of Melbourne | Doherty Institute
- nickp60
- oracle5th
- pmenzel@LaborBerlin
- QPC-github
- rpetit3Wyoming Public Health Laboratory
- rpughoPA, USA
- shengxingou
- Stankye
- thanhleviet@quadram-institute-bioscience
- tomkinscBroad Institute of MIT and Harvard
- Vikash84University of Minnesota
- voorloopnulAlicante, Spain