Some weird things in the change log
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Here are some weird things that I noticed
Some genes were removed in a revision and re-added without changing in another one, some close in time (top) some distant (bottom)
3798 mah79 2016-12-21 II SPBC691.05c ist2 CDS added complement(join(1430755..1432230,1432360..1432890))
3787 vw253 2016-12-18 II SPBC691.05c ist2 CDS removed complement(join(1430755..1432230,1432360..1432890))
3514 vw253 2016-07-14 I SPAC110.06 CDS added complement(1905728..1905820)
1909 antonia 2014-07-08 I SPAC110.06 CDS removed complement(1905728..1905820)
1900 antonia 2014-07-04 I SPAC110.06 CDS added complement(1905728..1905820)Some genes were removed and re-added with different coordinates in distant revisions:
revision user date chromosome systematic_id primary_name feature_type added_or_removed value
7957 kmr44 2022-01-12 I SPNCRNA.2002 ncRNA added 2448..2760
4250 mah79 2017-08-23 III SPNCRNA.2002 adh1-antisense-2 ncRNA removed complement(1590089..1593983)
7957 kmr44 2022-01-12 I SPNCRNA.2001 ncRNA added 2118..2347
4250 mah79 2017-08-23 III SPNCRNA.2001 adh1-antisense-1 ncRNA removed complement(1590025..1593983)
7957 kmr44 2022-01-12 II SPNCRNA.103 ncRNA added complement(339346..340012)
6674 mah79 2020-11-16 II SPNCRNA.103 sme2 ncRNA removed complement(339346..340907)
1924 vw253 2014-07-11 I SPAC1A6.03c CDS added complement(1070139..1072127)
1914 antonia 2014-07-09 I SPAC1A6.03c CDS removed complement(join(1070061..1070138,1070205..1072127))
3787 vw253 2016-12-18 II SPBC691.05c ist2
I remember I deleted by mistake at one point. we noticed and added back. Probably because we had annotations attached to it.
I will look into the others next week....
Hi @ValWood I dont think the ones where the location didnt change are worth looking into (there are a few more). They are probably things that were deleted accidentally and eventually added. Just wanted to ask if there was some other reason for it.
Those rnas that were removed and then added with different coordinates are maybe worth having a look.
Some also switched between 2 values several times:
8403 vw253 2022-08-25 I SPAC26A3.09c rga2 CDS added complement(3348569..3352258)
20070130 - 2007-01-30 I SPAC26A3.09c rga2 CDS added complement(3348569..3352396)
20060517 - 2006-05-17 I SPAC26A3.09c rga2 CDS added complement(3349469..3353296)
20060219 - 2006-02-19 I SPAC26A3.09c rga2 CDS added complement(3348569..3352396)
20040915 - 2004-09-15 I SPAC26A3.09c rga2 CDS added complement(3349469..3353296)