popitsch

Bioinformatician

MPLVienna / Austria

Pinned Repositories

argos
Analysis of Repetitive GenOme Sequences
Language:Java00
codoc
CODOC project
Language:Java6 1 10
cohort_varan
python pipelines for the comprehensive annotation of cohort-wide VCF files
Language:Python00
nanopanel2
Nanopanel2: a somatic variant caller for Nanopore panel sequencing data
Language:Python8 1 102
pysrna
pysrna: analysis pipeline for small RNA-seq data
Language:Python20
rnalib
rnalib: a python-based transcriptomics library
Language:Jupyter Notebook20
splice_sim
Splice_sim: a nucleotide-conversion enabled RNA-seq simulation and evaluation framework
Language:Python2 1 00
varan-gie
VARAN-GIE extends Broad's popular genome browser IGV with functionality to edit, annotate and merge genomic interval sets
Language:Java40
vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
Language:Go00
wtchg-rg
Reliable Genome project
Language:Java90

popitsch's Repositories

popitsch/wtchg-rg
Reliable Genome project
Language:Java90
popitsch/nanopanel2
Nanopanel2: a somatic variant caller for Nanopore panel sequencing data
Language:Python8 1 102
popitsch/codoc
CODOC project
Language:Java6 1 10
popitsch/varan-gie
VARAN-GIE extends Broad's popular genome browser IGV with functionality to edit, annotate and merge genomic interval sets
Language:Java40
popitsch/pysrna
pysrna: analysis pipeline for small RNA-seq data
Language:Python20
popitsch/rnalib
rnalib: a python-based transcriptomics library
Language:Jupyter Notebook20
popitsch/splice_sim
Splice_sim: a nucleotide-conversion enabled RNA-seq simulation and evaluation framework
Language:Python2 1 00
popitsch/argos
Analysis of Repetitive GenOme Sequences
Language:Java00
popitsch/cohort_varan
python pipelines for the comprehensive annotation of cohort-wide VCF files
Language:Python00
popitsch/vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
Language:Go00
popitsch/w3id.org
Website source code for w3id.org
Language:ApacheConf