Rnalib is a python library for handling transcriptomics data.
To install the latest release of rnalib, use the following command:
pip install rnalib
To install the latest version of rnalib from source, use the following command:
pip install git+https://github.com/popitsch/rnalib.git
Please see the rnalib's documentation for more information.
We provide a set of ipython notebooks for demonstrating rnalib's API:
- README.ipynb: basic introduction to rnalib
- AdvancedUsage.ipynb: advanced API usage
We also provide a (growing) set of tutorials for demonstrating rnalib in real-world use cases:
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Tutorial: Comparison of different gene annotation sets (human and fly)
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Tutorial: Transcriptome annotation with genemunge, archs4 and mygene.info
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We also compare rnalib to other genomics libraries wrt. performance in this RelatedWork notebook.