qian-lab

qian-lab's Stars

• jupyterlab/jupyterlab

  JupyterLab computational environment.

  Language:TypeScript14.1k3078.5k3.3k

• spyder-ide/spyder

  Official repository for Spyder - The Scientific Python Development Environment

  Language:Python8.3k29418.2k1.6k

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.3k727.9k906

• scverse/scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  Language:Python1.9k511.7k594

• bcbio/bcbio-nextgen

  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

  Language:Python988863.1k354

• jalvesaq/Nvim-R

  Vim plugin to work with R

  Language:Vim Script95920713124

• pachterlab/poseidon

  poseidon system - open source syringe pumps and microscope for laboratories

  Language:Jupyter Notebook171222754

• pysb/pysb

  Python framework for Systems Biology modeling

  Language:Python1651928071

• iaconogi/bigSCale2

  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data

  Language:R10163438

• SpatialTranscriptomicsResearch/st_pipeline

  ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.

  Language:Python7872030

• vib-singlecell-nf/vsn-pipelines

  A repository of pipelines for single-cell data in Nextflow DSL2

  Language:Nextflow741220431

• aertslab/SCope

  Fast visualization tool for large-scale and high dimensional single-cell data

  Language:Python68934515

• Vessy/sysBio

  R package for systems biology modeling

  Language:R15913

• amoghpj/cell-cycle-models

  What's all this talk about cell cycle models?

  Language:Python2201