qupath/qupath-extension-instanseg

Issues

• .modelPath has back slashes

  #108 opened 2 months ago by lauracmurphy
  6

• Select all TMA cores in InstanSeg runs on missing cores

  #105 opened 2 months ago by lauracmurphy
  5

• Need to escape (or reverse) slashes in model path for Windows scripts

  #98 opened 2 months ago by petebankhead
  0

• Using `Pixel Width` and `Pixel Height` is not enough

  #99 opened 3 months ago by lacan
  1

• Running instanseg script for whole project

  #92 opened 3 months ago by mikemcka
  2

• Optimize post-processing / resolving overlaps

  #97 opened 3 months ago by petebankhead
  0

• brightfield nuclei and cells model?

  #95 opened 3 months ago by r100gs
  1

• download error

  #93 opened 3 months ago by r100gs
  2

• PruneObjectOutputHandler can be unusably slow for complex parent ROIs

  #88 opened 3 months ago by petebankhead
  3

• The UI doesn't block for full processing (including measurements)

  #89 opened 3 months ago by petebankhead
  0

• Multiple prompts to download PyTorch

  #86 opened 4 months ago by petebankhead
  0

• Color deconvolution stains are never updated

  #71 opened 4 months ago by petebankhead
  0

• Local and downloaded models

  #67 opened 4 months ago by petebankhead
  8

• Figure out preferred interTileBounds value

  #66 opened 4 months ago by petebankhead
  0

• Remove colouring

  #43 opened 4 months ago by alanocallaghan
  1

• Ensure directory watching works as expected

  #46 opened 4 months ago by alanocallaghan
  0

• More informative GUI error when tiles fail due to incorrect channel spec

  #48 opened 4 months ago by alanocallaghan
  2

• Channel selection sometimes selects all channels in a brightfield

  #47 opened 4 months ago by alanocallaghan
  0

• Fill holes and keep largest fragment

  #37 opened 5 months ago by alanocallaghan
  0

• Make measurements

  #33 opened 5 months ago by alanocallaghan
  0

• Script API and recordable for workflows

  #34 opened 5 months ago by alanocallaghan
  0

• Choose output object class

  #36 opened 5 months ago by alanocallaghan
  0

• UI can't be instantiated if PyTorch not already available

  #27 opened 7 months ago by petebankhead
  2

• Setting arguments in forward pass

  #5 opened 7 months ago by alanocallaghan
  1

• Add "nuclei only" option

  #9 opened 8 months ago by alanocallaghan
  0

• Interruption not handled gracefully

  #15 opened 8 months ago by alanocallaghan
  0

• InstanSegTask shouldn't derive from JavaFX Task

  #18 opened 8 months ago by petebankhead
  0

• Normalization should be applied at a clearly-defined resolution

  #19 opened 8 months ago by petebankhead
  13

• Channel picker sometimes "selects" null channel(s)

  #21 opened 8 months ago by alanocallaghan
  1

• Set from visible broken in 130 channel image

  #11 opened 8 months ago by alanocallaghan
  8

• Block run button if not runnable (image open, annotation present, model selected)

  #3 opened 10 months ago by alanocallaghan
  0

• Settings in GUI should apply to model running

  #4 opened 10 months ago by alanocallaghan
  0

• Models directory preference

  #1 opened 10 months ago by alanocallaghan
  0

• Progress indicator/

  #2 opened 10 months ago by alanocallaghan
  0