raamana
Neuroscientist trying to bridge the gap between clinic & computer science. Interests: Machine learning, Neuroimaging, Brain disorders, Informatics, Open science
University of PittsburghPittsburgh, PA
raamana's Stars
asciinema/asciinema
Terminal session recorder 📹
sivel/speedtest-cli
Command line interface for testing internet bandwidth using speedtest.net
py-why/dowhy
DoWhy is a Python library for causal inference that supports explicit modeling and testing of causal assumptions. DoWhy is based on a unified language for causal inference, combining causal graphical models and potential outcomes frameworks.
uber/causalml
Uplift modeling and causal inference with machine learning algorithms
beartype/beartype
Unbearably fast near-real-time hybrid runtime-static type-checking in pure Python.
uqfoundation/dill
serialize all of Python
HazyResearch/meerkat
Creative interactive views of any dataset.
BiomedSciAI/causallib
A Python package for modular causal inference analysis and model evaluations
dssg/aequitas
Bias Auditing & Fair ML Toolkit
paulbrodersen/netgraph
Publication-quality network visualisations in python
cdt15/lingam
Python package for causal discovery based on LiNGAM.
hfawaz/cd-diagram
Critical difference diagram with Wilcoxon-Holm post-hoc analysis.
foges/whisper-dictation
Dictation app based on the OpenAI speech-to-text models
zaccharieramzi/fastmri-reproducible-benchmark
Try several methods for MRI reconstruction on the fastmri dataset. Home to the XPDNet, runner-up of the 2020 fastMRI challenge.
ucl-pond/pySuStaIn
Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.
imr-framework/pypulseq
Pulseq in Python
weecology/ogrants
Open grants list
pehses/twixtools
python file reader/writer for Siemens MRI raw data
wtclarke/pymapvbvd
Python port of mapVBVD
feilong/brainplotlib
A lightweight package to plot brain surfaces with Python.
raamana/graynet
Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)
Remi-Gau/online_neuroimaging_resources
a laundry list of resources for MRI, fMRI, EEG, MEG...
niksirbi/brain4views
Plotting 4 brain surface views on a single matplotlib figure
Open-Minds-Lab/mrQA
mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance
bids-standard/awesome-bids
A curated list of awesome BIDS projects, proposals, apps and resources
poldrack/academicdb
Project to maintain a database for CV/website rendering
DrMichaelLindner/MAP4SL
Mulitband Artefact Probe for Slice Leakage
ehudkr/roc-n-roll
Interactive plotting of ROC (and precision-recall) curves showing multiple metrics evaluations along the curve.
GIfMI/declutter-mri-protocols
Python tools to find differences in Siemens protocol trees and sequence parameters
nimh-sfim/lab-docs
Lab documentation