No stdout / stderr for CommandOutputParameter type
illusional opened this issue · 2 comments
illusional commented
Version: 2019.12.06
IDE: vscode
(Version: 1.41.0)
Benten is reporting a problem when stderr
| stdout
is used as a type on a CommandOutputParameter, but I believe (and CWLTool validate is saying) it's okay.
Minimum example:
cwlVersion: v1.0
class: CommandLineTool
baseCommand: "echo"
inputs:
inp:
type: File
inputBinding:
position: 0
outputs:
std: stdout
Deleted user commented
@illusional Thanks for reporting this.
Did you first install Benten before Sept 2019? If that is possible, could you try one check - under ~/.config/sevenbridges/benten/
can you remove the schema-v1.0.json
file? In the original schema these were not formally written up as acceptable types. I patched the schema that is distributed with Benten, but only on 13th Sept (
~/.config/sevenbridges/benten/
and restarting Benten will copy over the new schema.
If this is not the issue, I will look into it. Thanks!
illusional commented
That was it, thanks @kaushik-work!