Pinned Repositories
awesome-biology
Curated (meta)list of resources for Biology.
convert-this-to-that
Quickly lookup how to convert common bioinformatics file formats
dotfiles-vim
my vim productivity suite!
gistie
A tiny gist creation script
kung-func
Functional programming constructs ... kung-fu style
makebio
Manage computational biology projects
til
today I learned..
vim-snakemake
Updated Snakemake syntax highlighting copied from the official repository
sequenceserver
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
raivivek's Repositories
raivivek/gistie
A tiny gist creation script
raivivek/papers-per-week
A list of academic papers that I am reading and plan to read.
raivivek/2015_internship-notes
A day to day log of my research intern
raivivek/afra
Genome Annotation for the Masses
raivivek/An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
raivivek/Awesome-Bioinformatics
2018 Recommended Papers to Read in Bioinformatics as Voted by Bioinformaticians
raivivek/awesome-public-datasets
An awesome list of high-quality open datasets in public domains (on-going).
raivivek/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
raivivek/bioinf545_w18
raivivek/chromVARmotifs
R package with motifs for use with chromVAR
raivivek/free-programming-books
raivivek/mugqic-demo
raivivek/sequenceserver
Intuitive local web frontend for the BLAST bioinformatics tool
raivivek/talks
raivivek/coursework
Notes and additional material related to my college courses
raivivek/data-science-ipython-notebooks
Continually updated data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.
raivivek/dev-setup
Mac OS X development environment setup: Easy-to-understand instructions with automated setup scripts for developer tools like Vim, Sublime Text, Bash, iTerm, Python data analysis, Spark, Hadoop MapReduce, AWS, Heroku, JavaScript web development, Android development, common data stores, and dev-based OS X defaults.
raivivek/drmr
A tool for submitting pipeline scripts to distributed resource managers.
raivivek/embellish
a lightweight static website generator
raivivek/fasta_utilities
A collection of scripts developed to interact with fasta, fastq and sam/bam files.
raivivek/gazette-of-india
raivivek/language-in-action_hayakawa
Language in Thought and Action: S.I. Hayakawa; Notes and exercises
raivivek/learn_nodejs
My experiments with nodejs...
raivivek/OpenSoft-2014
Project for the event Open Soft of the general championship.
raivivek/parallel-fastq-dump
parallel fastq-dump wrapper
raivivek/rubyscholar
Scrape Google Scholar Profile into a custom HTML using Ruby (Nokogiri)
raivivek/snakemake-template
Snakemake template suitable for running on HPC using Slurm
raivivek/snpr
The sources of the openSNP website
raivivek/WIGI
Wikipedia Gender Index (WIGI), uses Wikidata to produce gender-related statistic on Wikipedia Biographies
raivivek/WIGI-website