/R-scripts-graphing-statistics

My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq

Primary LanguageR

R_plots

This is my R scripts archive for publication-ready analysis and plotting including:

  1. PCA

  2. Area plot

  3. Dotplot
    alt text

  4. Heatmap

  5. Bar plots for 16S metagenomics

  6. World map

  7. Rarefraction curve for diversity analysis
    alt text

  8. Volcano plot (RNAseq) alt text

  9. MA plot (RNAseq) alt text

  10. Column plot using Geom_bar
    alt text

  11. Faceted bar plot alt text

R scripts for program:

  1. Hierbaps: phylogenetic clustering method
  2. Diversity index: Inverse Simpson, Fisher Alpha and Shannon-Weaver
  3. Sleuth (RNAseq)
  4. DESeq 2