reskejak/ATAC-seq

Issues

• species of example

  #11 opened 2 years ago by Rfriedmancolumbia
  2

• Use for multiple sample differential analysis

  #14 opened a year ago by amootta
  1

• csaw regionCounts error

  #13 opened 2 years ago by baylward333
  2

• Clarification on BAM files used for CSAW_workflow

  #17 opened 5 months ago by jasminemesparza
  1

• csaw_workflow.R script: Error in (function (classes, fdef, mtable) (csaw_workflow.R#116): unable to find an inherited method for function ‘seqinfo’ for signature ‘"NULL"’ #15

  #18 opened 4 months ago by mglgc
  1

• ChIP-seq broadpeaks analysis

  #19 opened 2 months ago by allaway
  1

• Error in csaw_workflow: Error in (function (classes, fdef, mtable) (csaw_workflow.R#116): unable to find an inherited method for function ‘seqinfo’ for signature ‘"NULL"’

  #15 opened a year ago by prmunn
  2

• MA plotting error

  #3 opened 2 years ago by beroult
  15

• availability of mouse ATACSeq data

  #12 opened 2 years ago by Rfriedmancolumbia
  2

• Is it okay to skip the "Format" section of ATACseq_workflow.txt ?

  #10 opened 2 years ago by rrashford
  2

• Differentially accessible peaks in fasta file

  #9 opened 2 years ago by beroult
  2

• Error with minimalbedpe.sh

  #8 opened 3 years ago by Sanaya30
  3

• Error in DataFrame(..., check.names = FALSE) : different row counts implied by arguments

  #7 opened 3 years ago by JorisBI63
  0

• Error with bedpeMinimalConvert.sh file not recognizing .tn5.bedpe file from previous step

  #6 opened 3 years ago by kimmaip
  2

• ATAC-seq normalization question

  #5 opened 3 years ago by Rafaelsoler13
  2

• Input object type into regionCounts() ?

  #4 opened 3 years ago by rrashford
  4

• Difference Between ENCODE and This?

  #1 opened 4 years ago by YogiOnBioinformatics
  2

• 'Calloc' could not allocate memory (18446744072325953536 of 4 bytes)

  #2 opened 4 years ago by sylestiel
  0