Issues
- 2
GoogleDriveDownloader Issue stops TractionForceConfig function from working properly
#60 opened by jf767 - 3
- 1
TractionForceConfig implementation is incompatible with scikit-learn v1.0 and above
#58 opened by a19s - 0
- 0
Small spots of high forces skew results
#55 opened by l-kaplan - 0
- 0
How to filter forces according to ROI
#54 opened by l-kaplan - 6
Updating pytraction to later versions
#52 opened by rg314 - 0
crop_aligned_slice is set to False
#53 opened by rg314 - 7
Edge artefact after align_slice()
#44 opened by rg314 - 1
MemoryError - Can't process 2048x2048 images
#50 opened by l-kaplan - 0
replace travis.ci with github actions
#47 opened by rg314 - 2
FileNotFoundError: DLL with shapely
#29 opened by rg314 - 1
ImageJ plugin (Java) that links to python API
#45 opened by rg314 - 8
Simulation of ground truth
#20 opened by rg314 - 4
documentation and tests missing from package
#16 opened by rg314 - 0
OpenPIV v0.23.5: piv updated from openpiv
#42 opened by rg314 - 6
thread process_stack(img, ref)
#35 opened by rg314 - 0
improvements in saving output
#18 opened by rg314 - 0
ComplexWarning and SparseEfficiencyWarning
#28 opened by rg314 - 0
Contributing.md
#37 opened by rg314 - 3
training data for cell segmentation
#4 opened by rg314 - 0
Allow to use a time series as reference image
#36 opened by a19s - 1
[experimental] Segmentation issue
#31 opened by a19s - 6
streamlit or simple web app for UI
#10 opened by rg314 - 2
example notebooks need updating
#27 opened by rg314 - 0
RuntimeWarning: Please ensure that the input image has shape (f,c,w,h) the current shape is (1088, 1590)
#34 opened by rg314 - 1
Example data for multiple image stacks
#32 opened by a19s - 0
Usage video as per ZeroCostDL4Mic
#33 opened by rg314 - 11
POC testing
#19 opened by rg314 - 11
MemoryError: Unable to allocate 91.6 GiB for an array with shape (78408, 78408) and data type complex128
#30 opened by a19s - 2
create examples notebook with different use case
#26 opened by rg314 - 3
- 0
"verbose" argument in TractionForce.process_stack() should be set to 1 (or True) to display processing log
#24 opened by a19s - 1
ZeroDivisionError: float division by zero
#23 opened by rg314 - 2
recursive roi
#22 opened by rg314 - 3
Roca-Cusachs TFM package
#21 opened by rg314 - 2
get_windows_size(self)
#15 opened by rg314 - 3
NaN result encountered. in fmin
#14 opened by rg314 - 2
Implement NMT for openpiv
#1 opened by rg314 - 2
Specific use of cuda model not allowing cpu compute
#11 opened by rg314 - 0
expand roi polygon by constant bleed
#12 opened by rg314 - 2
missing requirements file and dependencies
#3 opened by rg314 - 1
The command "source scripts/get_example_data.sh" failed and exited with 1 during .
#13 opened by rg314 - 1
- 4
automatic segmentation of cell
#2 opened by rg314 - 0
pytraction.utils.allign_slice
#9 opened by rg314 - 1
slow optimization
#6 opened by rg314 - 0
pull test and sample data using .sh
#5 opened by rg314 - 0