rhagenson
A bioinfo-magician and synthetic biologist with a heart of cells.
Yale School of MedicineNew Haven, CT
Pinned Repositories
pony-bio
Bioinformatics for the Pony ecosystem
ponyc
Pony is an open-source, actor-model, capabilities-secure, high performance programming language
2019-01-03-UNO
Data Carpentry Genomics Workshop at the Univeristy of Nebraksa Omaha - January 3-4, 2019
allourideas.org
allourideas allows groups to collect and priorize information in an open, democratic, and efficient process.
Awesome-CV
:page_facing_up: Awesome CV is LaTeX template for your outstanding job application
awesome-pony
Curated resources on the pony language
bio-tool-requests
Requests for Bioinformatics tools people want, but nobody has built
muscle
A copy of Robert C. Edgar's MUSCLE aligner
pony-tutorial
:horse: Tutorial for the Pony programming language
rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
rhagenson's Repositories
rhagenson/muscle
A copy of Robert C. Edgar's MUSCLE aligner
rhagenson/2019-01-03-UNO
Data Carpentry Genomics Workshop at the Univeristy of Nebraksa Omaha - January 3-4, 2019
rhagenson/awesome-pony
Curated resources on the pony language
rhagenson/bio-tool-requests
Requests for Bioinformatics tools people want, but nobody has built
rhagenson/biogo
biogo is a bioinformatics library for Go
rhagenson/biological-calculus
A Manubot continuous publishing (CP) article on biological calculus
rhagenson/biological-messaging
A Manubot continuous publishing (CP) article on biological messaging passing
rhagenson/demixer
Collection of methods to demix Illumina read data
rhagenson/git-novice
Software Carpentry introduction to Git for novices.
rhagenson/library-scaffolding-generator
Scaffolding generator for starting Pony libraries
rhagenson/main.actor-package-markdown
Generated markdown documentation for packages hosted on https://main.actor
rhagenson/MrBayes
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
rhagenson/polar-bookshelf
Polar is a personal knowledge repository for PDF and web content supporting incremental reading and document annotation.
rhagenson/ponyc
:horse: Pony is an open-source, actor-model, capabilities-secure, high performance programming language
rhagenson/presentations
View by https://talks.godoc.org/github.com/rhagenson/presentations/<name-of-root.slide>
rhagenson/Projects
:page_with_curl: A list of practical projects that anyone can solve in any programming language.
rhagenson/r-novice-gapminder
rhagenson/r-novice-inflammation
rhagenson/rootstock
Clone me to create your Manubot manuscript
rhagenson/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
rhagenson/seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
rhagenson/smash-paper
code for mapping and binning SMASH genomic data
rhagenson/smsk
Snakemake skeleton - Build workflows with Snakemake
rhagenson/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
rhagenson/tufte-ghost
Ghost theme in the style of Edward Tufte's books and handouts
rhagenson/tufte-markdown
Use markdown to write your handouts and books in Tufte style.
rhagenson/tufte-pandoc-css
Starter files for using Pandoc Markdown with Tufte CSS
rhagenson/unchan
Unordered Go channel
rhagenson/UNOAdvBIOIProgramming
This is the final collection of the assignments I completed as part of Advanced Bioinfomatics Programming through the University of Nebraska - Omaha. Any sensitive information has been removed to ensure security.
rhagenson/xer
Xs out visual characters to force inspecting code layout