rhagenson
A bioinfo-magician and synthetic biologist with a heart of cells.
Yale School of MedicineNew Haven, CT
rhagenson's Stars
dcjones/quip
Compressing next-generation sequencing data with extreme prejudice.
wdecoster/chopper
richardmleggett/MARTi
Metagenomic Analysis in Real Time
biobakery/MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
zaeleus/noodles
Bioinformatics I/O libraries in Rust
chubin/cheat.sh
the only cheat sheet you need
cxli233/FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
RealTimeGenomics/rtg-tools
RTG Tools: Utilities for accurate VCF comparison and manipulation
ShixiangWang/sigflow
Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow
RILAB/statements
Successful Job Applications and Grants
cole-trapnell-lab/cufflinks
mribeirodantas/nf-whisper
Proof-of-concept Nextflow pipeline to interact with OpenAI Whisper
stefan-hoeck/idris2-tutorial
SunPathLab/Butte
BoUnds of Time Till Expansion, a computational framework to investigate the SCNA arrival time in the somatic evolution toward the most recent common ancestor of tumor sample(s)
marbl/verkko
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
kasiaMarek/TyRE
wososa/PSI-Sigma
PSI-Sigma
stefan-hoeck/idris2-hedgehog
An Idris port of the Haskell Hedghog library
idris-hackers/software-foundations
Software Foundations in Idris
idris-lang/Idris2
A purely functional programming language with first class types
refresh-bio/DSRC
DSRC - DNA Sequence Reads Compressor
mcanouil/awesome-quarto
A curated list of Quarto talks, tools, examples & articles! Contributions welcome!
z3tt/beyond-bar-and-box-plots
Slides, recording and hands-on tutorial for the USGS Data Science webinar
Midnighter/nextflow-gotchas
A collection of unexpected challenges and learnings with nextflow and nf-core.
nf-core/tools
Python package with helper tools for the nf-core community.
apptainer/apptainer
Apptainer: Application containers for Linux
dask/distributed
A distributed task scheduler for Dask
plasma-umass/Mesh
A memory allocator that automatically reduces the memory footprint of C/C++ applications.
microsoft/snmalloc
Message passing based allocator
dask/dask
Parallel computing with task scheduling