rhngla

rhngla's Stars

• royerlab/napari-chatgpt

  A napari plugin to process and analyse images with chatGPT!

  Language:CSS22424

• AllenInstitute/coupledAE-patchseq

  Multimodal data alignment and cell type analysis with coupled autoencoders.

  Language:Jupyter Notebook81

• dcai-course/dcai-lab

  Lab assignments for Introduction to Data-Centric AI, MIT IAP 2024 👩🏽‍💻

  Language:Jupyter Notebook407142

• kuleshov-group/dgm-resources

  Language:HTML255

• NBISweden/workshop-scRNAseq

  Single cell RNA sequencing analysis course

  Language:HTML18495

• Gabe-YHLee/NRAE-public

  Language:Python282

• Gabe-YHLee/IRVAE-public

  Language:Jupyter Notebook224

• faif/python-patterns

  A collection of design patterns/idioms in Python

  Language:Python39.9k6.9k

• milo-lab/cellular_turnover

  Language:Jupyter Notebook113

• pbloem/former

  Simple transformer implementation from scratch in pytorch.

  Language:Python1k172

• synercys/annotated_latex_equations

  Examples of how to create colorful, annotated equations in Latex using Tikz.

  Language:TeX3.7k214

• KevinMusgrave/pytorch-metric-learning

  The easiest way to use deep metric learning in your application. Modular, flexible, and extensible. Written in PyTorch.

  Language:Python5.9k655

• civisanalytics/python-glmnet

  A python port of the glmnet package for fitting generalized linear models via penalized maximum likelihood.

  Language:Python26261

• lasso-net/lassonet

  Feature selection in neural networks

  Language:Python20051

• scverse/scvi-tutorials

  Notebooks used in scvi-tools tutorials

  Language:Jupyter Notebook4124

• iancovert/dl-selection

  Feature selection for deep learning models.

  Language:Python142

• Phlya/adjustText

  A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.

  Language:Jupyter Notebook1.5k87

• rfordatascience/tidytuesday

  Official repo for the #tidytuesday project

  Language:HTML6.6k2.4k

• openproblems-bio/openproblems

  Formalizing and benchmarking open problems in single-cell genomics

  Language:Jupyter Notebook28776

• AmeliaMN/STAT220-labs

  Pre-lab exercises for STAT 220 labs at the University of St Thomas

  8113

• gwgundersen/dpcca

  Code for the paper "End-to-end training of deep probabilistic CCA on paired biomedical observations".

  Language:Python245

• AmirAlavi/scipr

  Single Cell Iterative Point set Registration (SCIPR) to align scRNA-seq data

  Language:Python31

• AmirAlavi/sc-alignment-benchmarking

  Supporting data and benchmarking software for our SCIPR paper. (Under Construction)

  Language:Jupyter Notebook1

• vsitzmann/pytorch_prototyping

  Custom pytorch modules with sane default parameters useful for model prototyping. (U-Net, upsampling, downsampling...)

  Language:Python6314

• solevillar/Inference_and_Representation

  Language:TeX227

• dyf/blenderspin

  Language:Python21

• wangxu-scu/DeepCCA

  Deep Canonical Correlation Analysis implemented with tensorflow

  Language:Python144

• ZWMiller/machine_learning_from_scratch

  A place to hold various "from scratch" machine learning algorithms developed in Python as pedagogical tools.

  Language:Jupyter Notebook6028

• eriklindernoren/ML-From-Scratch

  Machine Learning From Scratch. Bare bones NumPy implementations of machine learning models and algorithms with a focus on accessibility. Aims to cover everything from linear regression to deep learning.

  Language:Python23.6k4.6k

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3k946