riasc

riasc's Stars

• microsoft/vscode

  Visual Studio Code

  Language:TypeScript164k3.3k185k29.2k

• neovim/neovim

  Vim-fork focused on extensibility and usability

  Language:Vim Script83k97611.9k5.7k

• zed-industries/zed

  Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.

  Language:Rust49.2k2119k3k

• nlohmann/json

  JSON for Modern C++

  Language:C++43k7672.2k6.7k

• google/googletest

  GoogleTest - Google Testing and Mocking Framework

  Language:C++34.7k1.2k2.2k10.1k

• llm-workflow-engine/llm-workflow-engine

  Power CLI and Workflow manager for LLMs (core package)

  Language:Python3.7k44219471

• shenwei356/seqkit

  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

  Language:Go1.3k28435159

• FrancescoXX/rustcrab

  An Open Source project with everything you need to learn about Rust.

  Language:TypeScript42456981

• ofajardo/pyreadr

  Python package to read and write R RData and Rds files into/from pandas dataframes. No R or other external dependencies required.

  Language:C29756923

• suhrig/arriba

  Fast and accurate gene fusion detection from RNA-Seq data

  Language:C++2261425350

• GoekeLab/bambu

  Reference-guided transcript discovery and quantification for long read RNA-Seq data

  Language:R188719523

• thegenemyers/FASTGA

  Pairwise whole genome aligner

  Language:C1361035

• rezacsedu/XAI-for-bioinformatics

  Explainable AI for Bioinformatics

  Language:Jupyter Notebook1164017

• virtualramblas/awesome-deep-learning-4-life-sciences

  A collection of resources for Deep Learning in Python for Life Sciences (with focus on biotech and pharma).

  996012

• AmpliconSuite/AmpliconSuite-pipeline

  A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.

  Language:Python5665828

• HKU-BAL/ClairS-TO

  ClairS-TO - a deep-learning method for tumor-only somatic variant calling

  Language:Python493173

• frankligy/SNAF

  Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation

  Language:Python434508

• huangnengCSU/longcallR

  LongcallR is a small variant caller for single molecule long-read RNA-seq data

  Language:Rust41314

• sheynkman-lab/Long-Read-Proteogenomics

  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

  Language:Python3877316

• CFIA-NCFAD/wgscovplot

  The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth information, variants and DNA Gene features

  Language:JavaScript171326

• mliszcz/fish-shell

  The user-friendly command line shell.

  Language:C++121

• ylab-hi/ScanNeo2

  Snakemake-based computational workflow for neoantigen prediction from diverse sources

  Language:Python123231

• quira-org/README-Template

  A template for your READMEs

  9808

• YiLab-SC/scHolography

  Language:Jupyter Notebook9110

• ouyang-lab/KARR-seq

  Language:Jupyter Notebook71

• maltesie/ChimericFragments

  Julia tool for the analysis and visualization of RNA-seq experiments producing chimeric reads.

  Language:Julia4101

• PavelBashtrykov/RepEnTools

  Language:Shell4210

• riasc/RNAnue

  RNAnue

  Language:C++2000

• rnajena/RNAswarm

  RNAswarm is a nextflow pipeline for differential RNA-RNA interaction analysis using RNA cross-linking methodologies

  Language:Python22161

• robinjugas/ProcaryaSV

  An ensemble structural variant calling pipeline driven by snakemake using multiple SV and CNV callers.

  Language:R1100