A Bioconductor package for meta analysis of high-throughput datasets using enriched feature annotations instead of just the features themselves.
See the "Description" file for additional requirements.
The Vignette provides a description of the thinking behind this package as well as a toy example for demonstration purposes.
Installation of this package from Github requires the devtools package.
install.packages("devtools")
library(devtools)
install_github("categoryCompare", "rmflight")Alternatively, you can install categoryCompare from Bioconductor itself.
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("categoryCompare")Flight RM, Harrison BJ, Mohammad F, Bunge MB, Moon LDF, Petruska JC and Rouchka EC (2014). .CATEGORYCOMPARE, an analytical tool based on feature annotations. Frontiers in Genetics. link
The official development site for categoryCompare is at https://github.com/rmflight/categoryCompare. There you may submit bug-reports / issues / comments to the developer.