rmflight/categoryCompare

Issues

• use new RCy3 functionality

  #36 opened 7 years ago by rmflight
  2

• Switch to RCy3 from RCytoscape

  #35 opened 7 years ago by rmflight
  0

• profiling graph calculations

  #34 opened 9 years ago by rmflight
  0

• check v2 graph with original

  #33 opened 9 years ago by rmflight
  0

• summarize comparisons

  #32 opened 10 years ago by rmflight
  0

• set individual cutoffs

  #31 opened 10 years ago by rmflight
  0

• creation of hypergeometric features should cull annotation

  #30 opened 10 years ago by rmflight
  0

• annotation_combinations should take a logical matrix

  #28 opened 10 years ago by rmflight
  0

• unique enrichment combinations

  #24 opened 10 years ago by rmflight
  1

• summary methods for various classes

  #27 opened 10 years ago by rmflight
  0

• pie charts

  #25 opened 10 years ago by rmflight
  0

• create test data for v2

  #21 opened 10 years ago by rmflight
  0

• re-implement cytoscape methods

  #26 opened 10 years ago by rmflight
  0

• bug in current code getting annotation id

  #22 opened 10 years ago by rmflight
  2

• enriched_result constructor

  #23 opened 10 years ago by rmflight
  1

• possible workflows for graph / table generation

  #20 opened 10 years ago by rmflight
  6

• convert to travis-r

  #19 opened 10 years ago by rmflight
  0

• color schemes

  #18 opened 10 years ago by rmflight
  0

• build combined_enrichments incrementally according to user prefs

  #17 opened 10 years ago by rmflight
  0

• Redesign: Comparisons first, enrichment after

  #15 opened 10 years ago by rmflight
  6

• Redesign: Enrichment

  #16 opened 10 years ago by rmflight
  0

• ANY: create easy annotation generation methods for params objects

  #14 opened 10 years ago by rmflight
  0

• add github repo to url, website, and vignette

  #8 opened 10 years ago by rmflight
  0

• saving copy of annotation from enrichment

  #13 opened 10 years ago by rmflight
  0

• reverse match possible lists against real lists

  #12 opened 10 years ago by rmflight
  0

• always use matrix rep of significant lists

  #11 opened 10 years ago by rmflight
  0

• easily save genes annotated to Terms

  #10 opened 11 years ago by rmflight
  1

• add cytoutnodes to vignette

  #9 opened 11 years ago by rmflight
  0

• easily get list associations

  #7 opened 11 years ago by rmflight
  1

• Note about namespace

  #4 opened 11 years ago by rmflight
  1

• Note about use of Biobase

  #5 opened 11 years ago by rmflight
  1

• Warning: undocumented methods

  #6 opened 11 years ago by rmflight
  1

• AsIs Warning in check

  #3 opened 11 years ago by rmflight
  1

• proper breaking edges

  #2 opened 12 years ago by rmflight
  0

• graph creation crashes with one or fewer annotations

  #1 opened 12 years ago by rmflight
  1