ropensci/taxa

Issues

• HTTP errors when parsing long taxon_id list

  #202 opened 5 years ago by janstrauss1
  12

• vctrs revdep issues

  #212 opened 3 years ago by DavisVaughan
  3

• Issues with CRAN check on 2022-03-10

  #211 opened 3 years ago by kamapu
  1

• Error when using parse_tax_data function

  #210 opened 3 years ago by emankhalaf
  1

• creating a taxonomy database for PR2

  #208 opened 4 years ago by ctekellogg
  10

• Vectorizing some classes and reorganizing inheritance hierarchy

  #197 opened 6 years ago by zachary-foster
  49

• error in db_ref$get() after using $set()

  #207 opened 4 years ago by sckott
  2

• Error: Failed to install 'taxa' from GitHub

  #206 opened 4 years ago by sdhutchins
  1

• import of taxdump files

  #204 opened 5 years ago by nick-youngblut
  3

• No taxon_rank information when parsing from NCBI taxonomy

  #203 opened 5 years ago by janstrauss1
  1

• use cases section a bit outdated

  #201 opened 5 years ago by maelle
  4

• Function to produce html/latex table of taxonomic and associated data ?

  #200 opened 6 years ago by zachary-foster
  3

• Assign taxon_rank based on n_supertaxa

  #199 opened 6 years ago by brendanf
  1

• possible to put taxize in Suggests?

  #198 opened 6 years ago by sckott
  2

• Taxmap print method: edgelist takes long time to print when taxonomy is large

  #176 opened 6 years ago by zachary-foster
  1

• print_tree printing lots of NAs instead of tree

  #190 opened 6 years ago by zachary-foster
  0

• `taxa`: way to do operations on objects within it

  #196 opened 6 years ago by sckott
  4

• Filter_obs error.

  #188 opened 6 years ago by grabear
  14

• Is a `head` function needed for `taxmap`?

  #195 opened 6 years ago by zachary-foster
  2

• Print method idea: tidy lists

  #194 opened 6 years ago by zachary-foster
  0

• news

  #193 opened 6 years ago by sckott
  1

• Support matrix data type in parsers and subsetting functions

  #192 opened 6 years ago by zachary-foster
  0

• taxonomy_table function issue with add_id_column parameter.

  #191 opened 6 years ago by grabear
  1

• Parsers should return empty taxmap for zero-length inputs

  #185 opened 6 years ago by zachary-foster
  0

• No Date in DESCRIPTION file

  #187 opened 6 years ago by sdhutchins
  2

• invalid NSE warning when using full path to variable

  #186 opened 6 years ago by zachary-foster
  0

• New function(s) to add taxa to a taxonomy

  #172 opened 6 years ago by zachary-foster
  6

• Phylogeny in a taxmap?

  #184 opened 6 years ago by sckott
  5

• Allow parsing functions to use reversed classifications

  #175 opened 6 years ago by zachary-foster
  3

• git tag version released to cran

  #183 opened 6 years ago by sckott
  1

• Make `filter_obs` default to filtering all datasets

  #182 opened 6 years ago by zachary-foster
  0

• `filter_obs`: consider allowing multiple datasets at once

  #179 opened 6 years ago by zachary-foster
  0

• Print method bugs when a table only has taxon ID

  #181 opened 6 years ago by zachary-foster
  0

• Need non-NSE versions of functions

  #180 opened 6 years ago by zachary-foster
  0

• Allow `filter_taxa` to subset anything that has names, length, and can be subset

  #178 opened 6 years ago by zachary-foster
  0

• Speed up `parse_tax_data`

  #177 opened 6 years ago by zachary-foster
  0

• When printing tibbles in `taxmap`, reduce number of name-only cols printed

  #174 opened 6 years ago by zachary-foster
  0

• Look into cli for adding text trees

  #173 opened 6 years ago by zachary-foster
  5

• hex sticker

  #171 opened 6 years ago by zachary-foster
  3

• Add a figure to one of the vignettes demonstating subtaxa, supertaxa, leaves, etc

  #170 opened 7 years ago by zachary-foster
  1

• Add function to add placeholder taxa to force ranks to occur at a specific level/depth

  #169 opened 7 years ago by zachary-foster
  0

• `mutate_obs`: when adding a vector that already exists, overwrite it with msg

  #168 opened 7 years ago by zachary-foster
  0

• Package size NOTE

  #166 opened 7 years ago by zachary-foster
  5

• `lookup_tax_data` no errors messages when downloads fail

  #167 opened 7 years ago by zachary-foster
  0

• Only print progress bars during interactive use

  #162 opened 7 years ago by zachary-foster
  0

• Parsing vignette

  #161 opened 7 years ago by zachary-foster
  2

• `taxmap` print bug when printing empty tibbles?

  #164 opened 7 years ago by zachary-foster
  0

• Fix odd names in `leaves` output when `simplify = TRUE`

  #165 opened 7 years ago by zachary-foster
  0

• Make help topics dedicated to NSE and R6/S3 syntax

  #163 opened 7 years ago by zachary-foster
  0

• Add demonstration of scalability and speed.

  #160 opened 7 years ago by zachary-foster
  0