rraadd88

rraadd88's Stars

• BurntSushi/ripgrep

  ripgrep recursively searches directories for a regex pattern while respecting your gitignore

  Language:Rust50.4k2951.7k2.1k

• sharkdp/fd

  A simple, fast and user-friendly alternative to 'find'

  Language:Rust35.6k148876844

• PrefectHQ/prefect

  Prefect is a workflow orchestration framework for building resilient data pipelines in Python.

  Language:Python18.3k1645.9k1.7k

• bndr/pipreqs

  pipreqs - Generate pip requirements.txt file based on imports of any project. Looking for maintainers to move this project forward.

  Language:Python7k57283405

• facebookresearch/lingua

  Meta Lingua: a lean, efficient, and easy-to-hack codebase to research LLMs.

  Language:Python4.4k2948240

• prefix-dev/pixi

  Package management made easy

  Language:Rust3.9k221.3k222

• ahupp/python-magic

  A python wrapper for libmagic

  Language:Python2.7k45214286

• rust-bio/rust-bio

  This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

  Language:Rust1.6k70202204

• facebookincubator/submitit

  Python 3.8+ toolbox for submitting jobs to Slurm

  Language:Python1.4k24122131

• narwhals-dev/narwhals

  Lightweight and extensible compatibility layer between dataframe libraries!

  Language:Python82013494124

• deep-diver/paper-reviewer

  Generate a comprehensive review from an arXiv paper, then turn it into a blog post. This project powers the website below for the HuggingFace's Daily Papers (https://huggingface.co/papers).

  Language:Python7328381

• bcmi/libcom

  Image composition toolbox: everything you want to know about image composition or object insertion

  Language:Python589143841

• fulcrumgenomics/fgbio

  Tools for working with genomic and high throughput sequencing data.

  Language:Scala3201941770

• bioFAM/MOFA2

  Multi-Omics Factor Analysis

  Language:R3181414053

• Wainberg/ryp

  R inside Python

  Language:Python172153

• ksahlin/strobealign

  Aligns short reads using dynamic seed size with strobemers

  Language:C++1641118118

• yarden/MISO

  MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation

  Language:C1321413274

• art-egorov/lovis4u

  Bioinformatics tool for Locus Visualisation

  Language:Python852133

• noamteyssier/bedrs

  bedtools-like functionality for interval sets in rust

  Language:Rust491801

• pandoc-ext/section-bibliographies

  Filter to create a separate bibliography for each section or chapter

  Language:Lua462155

• kcleal/superintervals

  Fast interval intersection library

  Language:C++35130

• Center-for-Health-Data-Science/multiDGD

  Language:Jupyter Notebook23175

• artificial-scientist-lab/SciMuse

  Interesting Scientific Idea Generation Using Knowledge Graphs and LLMs: Evaluations with 100 Research Group Leaders

  Language:Python12111

• Neurotechnology-at-ETH-Zurich/siRNA_Design

  Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA design tools, identify which candidates are suggested by multiple different software tools, and perform further quality checking and validation on identified candidates.

  Language:Python9282

• sandmanns/clevRvis

  Visualization techniques for clonal evolution

  Language:R71

• christopherkenny/annual-reviews

  Quarto Template for Annual Reviews

  Language:TeX3

• rraadd88/dseq

  dseq: Deep sequencing analysis in dataframes

  Language:Jupyter Notebook2200

• rraadd88/parag

  parag🎆Interactive visualization of higher-order graphs in Python

  Language:Jupyter Notebook2210

• manzt/grid_df

  Language:Python1

• team113sanger/harle_dgCRISPR_paralogs

  Language:R1000