Pinned Repositories
removestar
Tool to automatically replace 'import *' in Python files with explicit imports
safepy
Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
adjustText
A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.
Aneuploidy_dependencies
scripts for plots
beditor
A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
chrov
🧬Chromosome Visualizations
dseq
dseq: Deep sequencing analysis in dataframes
htsimaging
🔬Python package for high-throughput single-cell imaging analysis.
parag
parag🎆Interactive visualization of higher-order graphs in Python
roux
🧰Convenient functions in Python.
rraadd88's Repositories
rraadd88/beditor
A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
rraadd88/chrov
🧬Chromosome Visualizations
rraadd88/dseq
dseq: Deep sequencing analysis in dataframes
rraadd88/parag
parag🎆Interactive visualization of higher-order graphs in Python
rraadd88/roux
🧰Convenient functions in Python.
rraadd88/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
rraadd88/safepy
Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
rraadd88/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
rraadd88/awesome-biological-image-analysis
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
rraadd88/awesome-biological-visualizations
A list of web-based interactive biological data visualizations.
rraadd88/awesome-CRISPR
List of software/websites/databases/other stuff for genome engineering
rraadd88/awesome-datascience
:memo: An awesome Data Science repository to learn and apply for real world problems.
rraadd88/awesome-network-analysis
A curated list of awesome network analysis resources.
rraadd88/awesome-python-data-science
Probably the best curated list of data science software in Python.
rraadd88/cellstar
Algorithm for round cells identification in the brightfield microscopy images.
rraadd88/fastq-dl
Download FASTQ files from SRA or ENA repositories.
rraadd88/FLEX_R
FunctionaL Evaluation of eXperimental perturbation (i.e. genome wide knockout) screens
rraadd88/GNN-Benchmark
Characterizing the Efficiency of Graph Neural Network Frameworks with a Magnifying Glass
rraadd88/orthrus
rraadd88/pairtree
Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples and cancer cell subpopulations than other algorithms, and on producing concise and informative interactive characterizations of posterior uncertainty.
rraadd88/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
rraadd88/pyensembl
Python interface to ensembl reference genome metadata
rraadd88/pyfaidx
Efficient pythonic random access to fasta subsequences
rraadd88/pytorch_geometric
Graph Neural Network Library for PyTorch
rraadd88/quarto-examples
A repository of self-contained quarto examples
rraadd88/rnaseq-1
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
rraadd88/rraadd88
rraadd88/sgatools
For the analysis and visualization of array-based genetic interaction screens
rraadd88/trex_manuscript
rraadd88/vep_pipeline
Pipeline for variant annotation using Variant Effect Predictor (VEP)