rrwick/Unicycler

Issues

• unicycler: error: argument --spades_options: expected one argument

  #345 opened a month ago by blediro
  0

• Trouble with --spades_options --careful

  #342 opened a month ago by JasonBeardSanger
  1

• Running Illumina-only assembly with options -1, -2, and -s altogether

  #341 opened 4 months ago by santiagorevale
  1

• unicycler's aligning reads seem to have stalled

  #340 opened 5 months ago by kystensy
  2

• getUnicyclerGraphStats.py script

  #339 opened 5 months ago by nbat64
  2

• SPAdes v4.0.0

  #338 opened 6 months ago by natchaphon602
  1

• configs/isolate_mode.info']" finished abnormally, OS return value: -7

  #337 opened 6 months ago by peiyaohu
  0

• Conflict of checkM results using SPADEs and Unicycler

  #336 opened 6 months ago by victoriam0119
  0

• Spades assembly crashed without log error

  #334 opened 8 months ago by Fla1487
  14

• Spades in its most recent version still gives the "too old" error

  #335 opened 7 months ago by felince
  0

• spades == Error == finished abnormally, OS return value: -9

  #300 opened 3 years ago by CS-CH
  2

• build fails in python3.12 since distutils has gone away

  #333 opened 9 months ago by haslamdb
  0

• small contigs with less than 1 fold of coverage

  #319 opened 2 years ago by DorothyTamYiLing
  2

• Error: SPAdes encountered an error

  #332 opened a year ago by louisvant
  4

• Assembly discrepancy with and without read dereplication

  #331 opened a year ago by pjdiebold
  1

• Illegal Division by Zero while Building long read bridges - continued error after update v0.5.0

  #318 opened 2 years ago by amysiceloff
  1

• pilon out of memory error

  #330 opened a year ago by DenisGoryunov
  2

• Threads usage warnings

  #329 opened a year ago by tamascogustavo
  0

• SPAdes crashed on M1 Mac

  #328 opened a year ago by kkslow
  0

• Installation error or make from source

  #327 opened a year ago by AceM1188
  0

• assembly error for single read R1

  #326 opened a year ago by sekhwal
  0

• Spurious entry in dnaA.fasta

  #325 opened a year ago by morgannprice
  0

• Finding overlaps with minimap... Killed

  #324 opened a year ago by jokopebri
  0

• Update spades installed with unicycler

  #314 opened 2 years ago by hafizmtalha
  3

• Does unicycler.log contains information about genome coverage?

  #323 opened a year ago by FA387
  0

• Odd results when assembling H. pylori

  #322 opened a year ago by davidaray
  1

• miniasm assembly failed

  #321 opened a year ago by abs-yy
  1

• Spades throwing read length error

  #320 opened a year ago by tomjevans
  1

• Unicycler v 0.5.0 still returns ZeroDivisionError: float division by zero error

  #313 opened 2 years ago by cmstouthamer
  1

• ler

  #317 opened 2 years ago by giriarteS
  0

• GFA reports contig with length 0

  #315 opened 2 years ago by SMorrison42
  1

• Filter contigs by depth

  #316 opened 2 years ago by termithorbor
  0

• spades --isolate automatically applied?

  #308 opened 2 years ago by lxsteiner
  1

• Installation Error (Error: compilation of Unicycler's C++ component failed)

  #311 opened 2 years ago by ahadlaique
  2

• unicycler error while saving 005_bridges_applied.gfa

  #297 opened 3 years ago by xzguqgsntdzq
  2

• original_depth is zero

  #296 opened 3 years ago by maanmi
  1

• can not detect the plasmid sequence

  #312 opened 2 years ago by zzsunday
  0

• Inquiry

  #310 opened 2 years ago by songmj86
  0

• UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1:invalid start byte

  #309 opened 2 years ago by 540889956
  1

• spades_options flag in Unicycler v0.5; valid input?

  #303 opened 2 years ago by tomdeman-bio
  3

• FileNotFoundError: [Errno 2] No such file or directory: 'bowtie2-build'

  #307 opened 2 years ago by hebamuh68
  0

• spades error in unicycler hybrid assembly

  #306 opened 2 years ago by dhananyashunmugam
  0

• cpu count versus available cpus

  #305 opened 2 years ago by EricDeveaud
  0

• Hybrid assemblie gives more contigs than "long-read only"

  #304 opened 2 years ago by PauObregon
  1

• Determining graph multiplicity

  #302 opened 3 years ago by bioramg
  0

• RecursionError: maximum recursion depth exceeded while getting the str of an object

  #301 opened 3 years ago by alienzj
  3

• Stuck on the long read alignments step

  #299 opened 3 years ago by sakusankun
  2

• Unicycler 0.5.0 - using SPAdes 3.15 (rather than 3.14) solved issues

  #298 opened 3 years ago by jen517
  0

• What is the rule about the origin of circular assembly when its dnaA/repA is missing?

  #295 opened 3 years ago by wyanren
  0

• the difference with Unicycler0.5.0 with Unicycle 0.4.8

  #294 opened 3 years ago by zjh-007
  0