rseurinc

rseurinc's Stars

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.2k261k350

• saeyslab/nichenetr

  NicheNet: predict active ligand-target links between interacting cells

  Language:R48314287118

• ENCODE-DCC/atac-seq-pipeline

  ENCODE ATAC-seq pipeline

  Language:Python38425313172

• ENCODE-DCC/chip-seq-pipeline2

  ENCODE ChIP-seq pipeline

  Language:Python24425176123

• dynverse/dynbenchmark

  Comparison of methods for trajectory inference on single-cell data 🥇

  Language:R198161341

• dynverse/dyno

  Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕

  Language:R170812432

• dpeerlab/SEACells

  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data

  Language:Jupyter Notebook14566027

• dynverse/dynmethods

  A collection of 50+ trajectory inference methods within a common interface 📥📤

  Language:R1201010526

• dynverse/dynverse

  A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍

  Language:R728415

• aertslab/arboreto

  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.

  Language:Jupyter Notebook5063624

• saeyslab/napari-sparrow

  https://sparrow-pipeline.readthedocs.io/en/latest/

  Language:Python2151200

• KlaraDewitte/Thesis_NicheNet

  Language:HTML1101