Pinned Repositories
PathogenTrack
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
Yeskit.old
A Tookit for scRNA data Exploration and Visualization
AML-CRNDE-Analysis
Oncogenic role of lncRNA CRNDE in acute promyelocytic leukemia and NPM1-mutant acute myeloid leukemia
Blast4GO
A fast and light-weighted bioinformatics pipeline for high-quality protein function prediction and functional analysis of genomic datasets
counts2tpm
counts to tpm/fpkm
diff_miRNA_expression_analysis
H3N2_scRNA_data
In-vitro H3N2 infection scRNA-seq dataset
plant-miR-finding-tool
an ultrafast and memory-efficient tool for plant miRNA annotation
subset-fastq
subset_fq.pl: subset paired fastq files in parallel
rstatistics's Repositories
rstatistics/alevin-tutorial
This is a support website for Alevin-tool (part of Salmon).
rstatistics/bioinformatics-environment
Describe the environment used for bioinformatics
rstatistics/cci
rstatistics/CeleScope
CeleScope
rstatistics/CellChat
R toolkit for inference and analysis of cell-cell communication from single-cell data
rstatistics/cellphonedb
rstatistics/covid_balf
R script for the covid balf data analysis
rstatistics/dockerfiles
rstatistics/docs.hpc.sjtu.edu.cn
SJTU HPC 用户文档站点
rstatistics/dorothea
R package to access DoRothEA's regulons
rstatistics/geosketch
Geometry-preserving random sampling
rstatistics/immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)
rstatistics/markdown-here
Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.
rstatistics/neoantigens-1
🏺 Exploring novel tumor epitope identification
rstatistics/ORFLine
A project to discover novel open reading frames in immune system
rstatistics/paga
Mapping out the coarse-grained connectivity structures of complex manifolds.
rstatistics/powerlevel9k
Powerlevel9k was a tool for building a beautiful and highly functional CLI, customized for you. P9k had a substantial impact on CLI UX, and its legacy is now continued by P10k.
rstatistics/rmats-issue
rmats=4.1.0
rstatistics/rmats-turbo
rstatistics/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
rstatistics/scHCL
rstatistics/scientific-proxy-settings
A collection to set proxy for scientific research
rstatistics/SCOPE-tools
Single-Cell Omics Preparation Entity Tools
rstatistics/scripts_for_rnaseq_analysis
This repo contains scripts to analyze rnaseq data
rstatistics/seqtk
Toolkit for processing sequences in FASTA/Q formats
rstatistics/umap_projection
rstatistics/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
rstatistics/umis
Tools for processing UMI RNA-tag data
rstatistics/velocyto.R
RNA velocity estimation in R
rstatistics/Viral-Track