Pinned Repositories
PathogenTrack
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
Yeskit.old
A Tookit for scRNA data Exploration and Visualization
AML-CRNDE-Analysis
Oncogenic role of lncRNA CRNDE in acute promyelocytic leukemia and NPM1-mutant acute myeloid leukemia
Blast4GO
A fast and light-weighted bioinformatics pipeline for high-quality protein function prediction and functional analysis of genomic datasets
counts2tpm
counts to tpm/fpkm
diff_miRNA_expression_analysis
H3N2_scRNA_data
In-vitro H3N2 infection scRNA-seq dataset
plant-miR-finding-tool
an ultrafast and memory-efficient tool for plant miRNA annotation
subset-fastq
subset_fq.pl: subset paired fastq files in parallel
rstatistics's Repositories
rstatistics/DGE_workshop_salmon
rstatistics/docker2singularity
A docker image for converting docker images to singularity images.
rstatistics/velocyto.py
RNA velocity estimation in Python
rstatistics/sleuth
Differential analysis of RNA-Seq
rstatistics/sra-explorer
Web application to explore the Sequence Read Archive.
rstatistics/HelloWorld
Just a toy.
rstatistics/parallel-fastq-dump
parallel fastq-dump wrapper
rstatistics/CrossSCC
An Single-Cell Clustering analysis framework Crossing batches of data
rstatistics/BEER
BEER: Batch EffEct Remover for single-cell data
rstatistics/scRNA-seq_notes
A list of scRNA-seq analysis tools
rstatistics/plant-miR-finding-tool
an ultrafast and memory-efficient tool for plant miRNA annotation
rstatistics/awosome-bioinformatics
A curated list of resources for learning bioinformatics.
rstatistics/CSAMA
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
rstatistics/SpliceV
Visualize coverage, canonical, and backsplice junctions.
rstatistics/DGE_workshop
rstatistics/rSVD
Randomized Matrix Decompositions using R
rstatistics/LandSCENT
Landscape Single Cell Entropy
rstatistics/TransCons-tools
TransCons-tools is a series of Python scripts developed to reproduce the analyses performed in Ruiz-Orera et al. (https://doi.org/10.1101/348326)
rstatistics/MiddleClick
Emulate a middleclick with triple tap on MacBook trackpad and Magic Mouse.
rstatistics/statistics-r
Controls the R (R-project) interpreter through Perl
rstatistics/Rtsne
R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding
rstatistics/multiexseq
rstatistics/umap
Uniform Manifold Approximation and Projection
rstatistics/scrna_mutations
Supplementary data for Petti, et al 2019 scRNA mutation publication
rstatistics/Comparative-Annotation-Toolkit
rstatistics/martian-python
Martian is a library that allows the embedding of configurationinformation in Python code. Martian can then grok the system anddo the appropriate configuration registrations. One example of a systemthat uses Martian is the system where it originated: Grok(http://grok.zope.org)
rstatistics/appris
Annotating principal splice isoforms
rstatistics/martian
Language and framework for high performance computational pipelines.
rstatistics/vartrix
Single-Cell Genotyping Tool
rstatistics/cb_sniffer
mutation(barcode) caller for 10x single cell data