Pinned Repositories
PathogenTrack
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
Yeskit.old
A Tookit for scRNA data Exploration and Visualization
AML-CRNDE-Analysis
Oncogenic role of lncRNA CRNDE in acute promyelocytic leukemia and NPM1-mutant acute myeloid leukemia
Blast4GO
A fast and light-weighted bioinformatics pipeline for high-quality protein function prediction and functional analysis of genomic datasets
counts2tpm
counts to tpm/fpkm
diff_miRNA_expression_analysis
H3N2_scRNA_data
In-vitro H3N2 infection scRNA-seq dataset
plant-miR-finding-tool
an ultrafast and memory-efficient tool for plant miRNA annotation
subset-fastq
subset_fq.pl: subset paired fastq files in parallel
rstatistics's Repositories
rstatistics/counts2tpm
counts to tpm/fpkm
rstatistics/subset-fastq
subset_fq.pl: subset paired fastq files in parallel
rstatistics/AML-CRNDE-Analysis
Oncogenic role of lncRNA CRNDE in acute promyelocytic leukemia and NPM1-mutant acute myeloid leukemia
rstatistics/H3N2_scRNA_data
In-vitro H3N2 infection scRNA-seq dataset
rstatistics/a
rstatistics/BBMap
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
rstatistics/bioconda-recipes
Conda recipes for the bioconda channel.
rstatistics/CeleScope-1
GEXSCOPE Single Cell Analysis Tool Kit
rstatistics/Contributions
Contribute Packages to Bioconductor
rstatistics/Depix
Recovers passwords from pixelized screenshots
rstatistics/Drop-seq
Java tools for analyzing Drop-seq data
rstatistics/genepattern-server
The GenePattern Server web application
rstatistics/ggrastr
Raster geoms for ggplot2
rstatistics/ggsci
🦄 Scientific journal and sci-fi themed color palettes for ggplot2
rstatistics/harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
rstatistics/Krona
Interactively explore metagenomes and more from a web browser.
rstatistics/natural-earth-vector
A global, public domain map dataset available at three scales and featuring tightly integrated vector and raster data.
rstatistics/NeoFuse
NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
rstatistics/PathogenTrack
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
rstatistics/PathogenTrackExplorer
R toolkit for exploring intracellular pathogens at Single-Cell level
rstatistics/pavian
🌈 Interactive analysis of metagenomics data
rstatistics/polyester
Bioconductor package "polyester", devel version. RNA-seq read simulator.
rstatistics/scirpy
A scanpy extension to analyse single-cell TCR and BCR data.
rstatistics/scmap
A tool for unsupervised projection of single cell RNA-seq data
rstatistics/scNSCLC_matrices
NSCLC scRNA matrices
rstatistics/seurat
R toolkit for single cell genomics
rstatistics/sicelore
Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanopore long read sequencing data.
rstatistics/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
rstatistics/single_cell_eb
Empirical Bayes methods for single cell data
rstatistics/venn
Draw Venn Diagrams