so looong!!
julieaorjuela opened this issue · 1 comments
julieaorjuela commented
Hello,
I wonder why smartdenovo is so looong ??!!
I have reserved 10 CPU and 100G per CPU. I have 52G of data (ONTreads >=10Kb) and launched
by default parametters using build_conda_envs/3f08aa12/bin/wtzmo -t 8 -i SMART.fa.gz -fo SMART.dmo.ovl -k 16 -z 10 -Z 16 -U -1 -m 0.1 -A 1000
It has beeing running from 10 days :S
At the moment, I have 55G of SMART.dmo.ovl and 17G of SMART.fa.gz.
Do you think it will be finish a day? How to estimate how many time is required to smartdenovo assembly?
Any idea?
Thanks.
Julie
ruanjue commented
Not sure.
Try to increase CPU numbers, or change the overlapper from zmo to dmo.
smartdenovo.pl -e dmo -t 32 SMART.fa.gz >run.makefile